Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12557 16 - 5097641 - 5097682 1 42

GTG ...

VVM ...

12559 16 - 36122255 - 36122317 1 63

CTG ...

LER ...

12561 16 + 22918490 - 22918594 1 105

CTG ...

LAE ...

12563 16 + 22935641 - 22935733 1 93

GTG ...

VGV ...

12565 16 - 44098795 - 44098881 1 87

CTG ...

LST ...

12567 16 + 20659971 - 20660147 1 177

CTG ...

LKV ...

12569 16 - 44111488 - 44111712 1 225

CTG ...

LVS ...

12571 16 - 18622926 - 18622955 1 30

ATG ...

MRR ...

12573 16 - 26371400 - 26371438 1 39

GTG ...

VQS ...

12575 16 - 36122360 - 36125020 2 57

TTG ...

LSI ...

12577 16 + 37831608 - 37833909 2 54

ATG ...

MSR ...

12579 16 + 20681900 - 20682072 2 54

ATG ...

MLM ...

12581 16 + 44157105 - 44157886 2 96

GTG ...

VLQ ...

12583 16 - 84829742 - 84831486 2 210

CTG ...

LQR ...

12586 16 - 44107829 - 44109507 2 72

ATG ...

MPF ...

12588 16 + 58732591 - 58732884 2 174

CTG ...

LPV ...

12591 16 + 58732585 - 58732884 2 180

GTG ...

VAL ...

12593 16 - 84829742 - 84831438 2 162

GTG ...

VHL ...

12595 16 - 17652804 - 17653231 2 45

CTG ...

LQQ ...

12597 16 - 36122360 - 36125122 3 159

CTG ...

LSQ ...

12599 16 + 17035465 - 17038430 2 204

TTG ...

LTF ...

12602 16 - 36046447 - 36049965 3 165

CTG ...

LFS ...

12604 16 - 11228129 - 11229246 2 105

ATG ...

MDQ ...

12606 16 + 44157922 - 44159557 2 120

ATG ...

MAL ...

12608 16 - 11228129 - 11229225 2 84

TTG ...

LSI ...

12610 16 - 14300130 - 14317303 2 90

CTG ...

LKA ...

12612 16 + 44157913 - 44159557 2 129

GTG ...

VRR ...

12614 16 + 58732630 - 58732884 2 135

GTG ...

VLW ...

12616 16 - 18624912 - 18625177 2 30

GTG ...

VLR ...

12618 16 + 20681876 - 20682072 2 78

CTG ...

LIR ...

12620 16 - 85103284 - 85120609 2 132

ATG ...

MES ...

12622 16 - 44107016 - 44107783 2 87

ATG ...

MSA ...

12624 16 - 36122360 - 36124996 2 33

CTG ...

LES ...

12626 16 - 17859521 - 17872610 2 51

ATG ...

MAG ...

12629 16 - 17859521 - 17872595 2 36

GTG ...

VRI ...

12631 16 + 17035453 - 17038430 2 216

CTG ...

LDK ...

12633 1 + 58401159 - 58401221 1 63

ATG ...

MKK ...

12635 16 + 44157108 - 44157886 2 93

CTG ...

LQG ...

12637 16 + 20655000 - 20655260 2 51

TTG ...

LMR ...

12639 16 - 5104706 - 5104961 2 174

ATG ...

MSC ...

12641 16 - 44107016 - 44107798 2 102

GTG ...

VTS ...

12643 1 + 107607075 - 107607107 1 33

TTG ...

LRK ...

12645 16 - 11232693 - 11235435 2 90

CTG ...

LEW ...

12647 16 + 33057524 - 33058689 2 30

ATG ...

MCI ...

12650 16 + 17035522 - 17038430 2 147

CTG ...

LEQ ...

12652 16 + 17035496 - 17038455 2 198

TTG ...

LNR ...

12654 16 - 31111062 - 31116084 2 123

CTG ...

LKS ...

12656 16 - 36122360 - 36125002 2 39

TTG ...

LSL ...

12658 16 + 25317454 - 25328296 2 63

ATG ...

MFH ...

12661 16 + 25865297 - 25866104 2 90

CTG ...

LRR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5