Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12445 16 - 44111488 - 44111628 1 141

TTG ...

LMV ...

12447 16 - 18624650 - 18624682 1 33

TTG ...

LSS ...

12449 1 - 93431440 - 93431478 1 39

TTG ...

LLL ...

12451 16 + 17015970 - 17016020 1 51

CTG ...

LSK ...

12453 16 - 56806714 - 56806749 1 36

CTG ...

LHL ...

12455 16 + 44157108 - 44157197 1 90

CTG ...

LQG ...

12457 16 + 44159510 - 44159557 1 48

TTG ...

LAL ...

12459 16 + 20681876 - 20681929 1 54

CTG ...

LIR ...

12461 16 + 95712129 - 95712203 1 75

CTG ...

LGH ...

12464 16 + 87715552 - 87715593 1 42

GTG ...

VQQ ...

12467 16 + 58732819 - 58732884 1 66

ATG ...

MSN ...

12469 1 + 135745326 - 135745424 1 99

ATG ...

MLR ...

12471 16 + 17038390 - 17038455 1 66

TTG ...

LKR ...

12473 16 - 18247285 - 18247320 1 36

CTG ...

LEE ...

12476 16 + 4649417 - 4649449 1 33

CTG ...

LSS ...

12479 1 - 161244207 - 161244335 1 129

ATG ...

MLT ...

12481 16 + 25865254 - 25865313 1 60

CTG ...

LNS ...

12483 1 - 172199177 - 172199221 1 45

CTG ...

LTS ...

12486 1 - 135877067 - 135877132 1 66

CTG ...

LPG ...

12488 16 - 18624355 - 18624390 1 36

CTG ...

LTA ...

12490 16 + 18817938 - 18818033 1 96

TTG ...

LTN ...

12492 16 - 85120526 - 85120618 1 93

ATG ...

MCR ...

12494 16 - 36052282 - 36052323 1 42

CTG ...

LHQ ...

12496 16 + 90225174 - 90225218 1 45

CTG ...

LER ...

12499 16 - 87494299 - 87494403 1 105

GTG ...

VYR ...

12501 16 + 77083818 - 77083907 1 90

TTG ...

LLR ...

12504 16 + 36285237 - 36285284 1 48

ATG ...

MNF ...

12506 16 - 10288081 - 10288125 1 45

CTG ...

LES ...

12508 16 + 8651425 - 8651466 1 42

TTG ...

LTS ...

12510 16 - 87487530 - 87487706 1 177

GTG ...

VLI ...

12512 16 - 26371400 - 26371540 1 141

GTG ...

VED ...

12514 16 - 44098795 - 44098845 1 51

GTG ...

VPW ...

12516 16 - 17927180 - 17927254 1 75

ATG ...

MPK ...

12519 16 - 36359460 - 36359585 1 126

ATG ...

MDV ...

12521 16 + 20655264 - 20655347 1 84

ATG ...

MYQ ...

12523 16 - 44111488 - 44111700 1 213

TTG ...

LET ...

12525 16 + 91655352 - 91655384 1 33

CTG ...

LTC ...

12528 16 - 5097641 - 5097688 1 48

CTG ...

LKV ...

12530 16 + 77083821 - 77083907 1 87

TTG ...

LRR ...

12532 16 - 44107795 - 44107887 1 93

GTG ...

VCS ...

12534 16 - 11235347 - 11235439 1 93

TTG ...

LTG ...

12537 16 + 36285222 - 36285284 1 63

CTG ...

LEK ...

12539 16 + 8651459 - 8651491 1 33

TTG ...

LPE ...

12542 16 + 14472046 - 14472108 1 63

GTG ...

VSA ...

12544 16 - 36359471 - 36359518 1 48

ATG ...

MNF ...

12546 16 - 44111488 - 44111703 1 216

CTG ...

LLE ...

12548 16 - 91576113 - 91576154 1 42

CTG ...

LIY ...

12551 16 + 22918523 - 22918594 1 72

CTG ...

LSV ...

12553 16 + 22937858 - 22937941 1 84

TTG ...

LPR ...

12555 16 - 36359471 - 36359509 1 39

ATG ...

MVT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5