Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12088 15 - 77763120 - 77763366 3 150

GTG ...

VPP ...

12090 15 - 101950467 - 101950922 2 111

GTG ...

VPV ...

12092 1 + 150102749 - 150102781 1 33

CTG ...

LGS ...

12094 15 - 97719611 - 97720185 2 141

ATG ...

MTA ...

12096 15 + 59316053 - 59317832 2 114

CTG ...

LLC ...

12098 15 - 74762577 - 74762945 3 207

GTG ...

VAS ...

12100 15 - 31597554 - 31598073 3 96

CTG ...

LFH ...

12102 1 + 93499035 - 93499079 1 45

TTG ...

LMS ...

12104 15 - 77761899 - 77763130 3 297

CTG ...

LQA ...

12106 15 + 99406650 - 99407290 2 51

CTG ...

LNT ...

12108 15 - 101951780 - 101952317 3 147

GTG ...

VPD ...

12113 16 + 37822601 - 37822717 1 117

TTG ...

LSA ...

12116 16 + 14465190 - 14465252 1 63

CTG ...

LKV ...

12119 16 + 25862385 - 25862423 1 39

CTG ...

LST ...

12122 16 - 36452117 - 36452239 1 123

TTG ...

LKS ...

12125 16 - 18624113 - 18624208 1 96

GTG ...

VRR ...

12128 1 + 171462879 - 171462944 1 66

TTG ...

LPT ...

12130 16 + 37829115 - 37829153 1 39

GTG ...

VCP ...

12132 1 + 107607069 - 107607107 1 39

ATG ...

MPL ...

12134 1 - 93417539 - 93417673 1 135

CTG ...

LWT ...

12136 16 + 95712120 - 95712203 1 84

GTG ...

VAS ...

12139 16 + 95712078 - 95712203 1 126

CTG ...

LHR ...

12141 16 - 32021761 - 32021811 1 51

ATG ...

MWR ...

12144 16 - 36367432 - 36367470 1 39

GTG ...

VPH ...

12147 16 + 84846311 - 84846373 1 63

ATG ...

MGC ...

12150 16 + 95712096 - 95712203 1 108

GTG ...

VER ...

12152 16 + 20552599 - 20552634 1 36

GTG ...

VQS ...

12155 16 + 17038339 - 17038455 1 117

TTG ...

LTW ...

12158 16 + 37822676 - 37822717 1 42

ATG ...

MAG ...

12160 16 + 37829166 - 37829222 1 57

CTG ...

LQS ...

12162 16 - 18624113 - 18624145 1 33

ATG ...

MKT ...

12164 16 - 10288076 - 10288135 1 60

CTG ...

LLT ...

12167 16 - 87486626 - 87486667 1 42

TTG ...

LKT ...

12170 16 + 22939409 - 22939477 1 69

ATG ...

MMR ...

12173 1 + 59698307 - 59698351 1 45

GTG ...

VNV ...

12176 16 - 36130981 - 36131019 1 39

CTG ...

LPQ ...

12179 16 + 44159465 - 44159557 1 93

ATG ...

MSR ...

12182 16 + 25862305 - 25862403 1 99

CTG ...

LPD ...

12184 16 + 93685104 - 93685142 1 39

TTG ...

LPL ...

12187 16 - 56825734 - 56825796 1 63

GTG ...

VDY ...

12190 16 - 56825734 - 56825799 1 66

TTG ...

LVD ...

12192 1 - 135889648 - 135889923 1 276

CTG ...

LTS ...

12194 16 + 48844190 - 48844267 1 78

GTG ...

VCL ...

12197 16 + 30600608 - 30600670 1 63

GTG ...

VEE ...

12200 16 + 25866114 - 25866149 1 36

CTG ...

LCL ...

12202 16 + 18817929 - 18818033 1 105

CTG ...

LFK ...

12205 16 - 5105919 - 5105954 1 36

GTG ...

VNS ...

12208 16 - 5026504 - 5026533 1 30

CTG ...

LSG ...

12211 16 - 36122255 - 36122293 1 39

CTG ...

LVT ...

12213 16 + 20655000 - 20655050 1 51

TTG ...

LMR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5