Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

12216 16 - 97746012 - 97746068 1 57

CTG ...

LQS ...

12219 16 + 25865248 - 25865313 1 66

TTG ...

LAL ...

12221 16 + 14467014 - 14467085 1 72

CTG ...

LAG ...

12223 16 + 17038318 - 17038455 1 138

TTG ...

LLK ...

12225 16 - 36130989 - 36131081 1 93

CTG ...

LPS ...

12227 1 - 153144549 - 153144623 1 75

CTG ...

LPG ...

12229 16 + 37829117 - 37829215 1 99

GTG ...

VPW ...

12231 16 - 85120526 - 85120609 1 84

ATG ...

MES ...

12234 16 + 22929679 - 22929747 1 69

CTG ...

LTA ...

12236 1 + 135766780 - 135766833 1 54

CTG ...

LCG ...

12239 16 - 87487530 - 87487703 1 174

CTG ...

LIK ...

12241 16 + 8651410 - 8651466 1 57

GTG ...

VAK ...

12244 16 + 26710572 - 26710619 1 48

CTG ...

LAG ...

12247 16 - 91928901 - 91928954 1 54

CTG ...

LHL ...

12250 16 + 95716129 - 95716305 1 177

CTG ...

LDV ...

12253 16 + 17038321 - 17038455 1 135

CTG ...

LKR ...

12255 16 + 62919545 - 62919592 1 48

CTG ...

LES ...

12258 16 + 95716201 - 95716305 1 105

CTG ...

LTM ...

12260 1 + 34863022 - 34863078 1 57

CTG ...

LEE ...

12262 16 + 14170332 - 14170400 1 69

CTG ...

LQG ...

12265 16 - 11229196 - 11229246 1 51

ATG ...

MDQ ...

12268 16 - 36049831 - 36049908 1 78

TTG ...

LRR ...

12271 16 - 44107795 - 44107845 1 51

CTG ...

LWK ...

12274 16 - 11229196 - 11229225 1 30

TTG ...

LSI ...

12276 16 + 44159492 - 44159557 1 66

TTG ...

LTF ...

12278 16 - 87494333 - 87494383 1 51

CTG ...

LQG ...

12280 16 - 10288076 - 10288132 1 57

CTG ...

LTS ...

12282 16 + 8648614 - 8648682 1 69

TTG ...

LGA ...

12285 16 + 36285213 - 36285284 1 72

ATG ...

MDL ...

12288 16 - 36452117 - 36452200 1 84

CTG ...

LSS ...

12290 16 + 14466990 - 14467085 1 96

CTG ...

LAD ...

12292 16 + 14472055 - 14472108 1 54

TTG ...

LPD ...

12294 16 - 36122244 - 36122369 1 126

ATG ...

MDV ...

12296 16 - 36367432 - 36367488 1 57

GTG ...

VFQ ...

12298 16 + 22939412 - 22939477 1 66

ATG ...

MRS ...

12300 16 - 17653187 - 17653231 1 45

CTG ...

LQQ ...

12303 16 + 37829138 - 37829215 1 78

ATG ...

MQM ...

12305 16 - 44111488 - 44111709 1 222

GTG ...

VSL ...

12308 16 - 26371400 - 26371477 1 78

GTG ...

VDV ...

12311 16 + 14467054 - 14467134 1 81

GTG ...

VAV ...

12313 16 - 10288081 - 10288116 1 36

GTG ...

VHQ ...

12315 16 - 16314266 - 16314316 1 51

CTG ...

LNP ...

12318 16 + 44157105 - 44157197 1 93

GTG ...

VLQ ...

12320 1 + 45321955 - 45321996 1 42

CTG ...

LMA ...

12322 16 + 37831608 - 37831637 1 30

ATG ...

MSR ...

12324 16 + 20681900 - 20681929 1 30

ATG ...

MLM ...

12327 16 + 48844208 - 48844267 1 60

CTG ...

LWI ...

12329 1 - 153246934 - 153246966 1 33

GTG ...

VHA ...

12331 16 + 14472067 - 14472108 1 42

CTG ...

LNH ...

12333 16 + 62919533 - 62919592 1 60

ATG ...

MYT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5