Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11986 15 + 99406608 - 99407290 2 93

GTG ...

VAL ...

11988 15 + 99406641 - 99407290 2 60

TTG ...

LRR ...

11990 15 - 101950467 - 101950985 2 174

CTG ...

LWC ...

11992 15 + 100171637 - 100173235 2 105

CTG ...

LGH ...

11994 15 - 96691752 - 96692426 3 165

GTG ...

VGP ...

11996 15 - 96691752 - 96692610 4 246

GTG ...

VSL ...

11998 15 + 74958336 - 74958550 2 111

ATG ...

MPG ...

12000 15 + 78929719 - 78930028 2 117

TTG ...

LCV ...

12002 15 - 94585501 - 94586410 2 96

ATG ...

MPR ...

12004 15 - 74762577 - 74763526 3 129

CTG ...

LWP ...

12006 15 - 76185931 - 76186285 3 252

ATG ...

MVL ...

12008 15 - 94585501 - 94586383 2 69

TTG ...

LHG ...

12010 15 - 76185931 - 76186291 3 258

CTG ...

LNM ...

12012 15 + 39025841 - 39030846 2 54

CTG ...

LKN ...

12014 15 - 76186745 - 76187689 2 72

GTG ...

VTA ...

12016 15 + 74716043 - 74716416 2 117

ATG ...

MHS ...

12018 15 - 101709803 - 101710441 3 267

ATG ...

MTN ...

12020 15 - 82336939 - 82337416 2 33

CTG ...

LCG ...

12022 15 - 97719611 - 97720167 2 123

TTG ...

LET ...

12024 15 - 101951780 - 101952260 2 90

CTG ...

LCR ...

12026 15 - 101847586 - 101847842 2 132

ATG ...

MAS ...

12028 15 + 78929695 - 78930028 2 141

ATG ...

MPM ...

12030 15 - 97713879 - 97714537 2 51

ATG ...

MMK ...

12032 15 - 77783476 - 77785124 2 60

CTG ...

LIS ...

12034 15 - 77763281 - 77763942 2 201

ATG ...

MRD ...

12036 15 - 76188013 - 76188284 3 174

CTG ...

LSG ...

12038 1 + 59698329 - 59698463 1 135

TTG ...

LNL ...

12041 15 + 74958291 - 74958550 2 156

ATG ...

MYR ...

12043 15 - 96691752 - 96692625 4 261

ATG ...

MQR ...

12045 15 - 76188013 - 76188302 3 192

CTG ...

LRL ...

12047 15 - 11986552 - 11991029 2 84

CTG ...

LVR ...

12049 15 - 74995459 - 74996481 2 51

GTG ...

VLL ...

12051 15 - 97713879 - 97714558 2 72

TTG ...

LGC ...

12053 15 + 100207792 - 100209588 2 51

CTG ...

LRP ...

12055 15 - 101847586 - 101848167 3 279

TTG ...

LSF ...

12057 15 + 100207783 - 100209588 2 60

TTG ...

LSI ...

12059 1 - 120113460 - 120113501 1 42

GTG ...

VEK ...

12061 15 - 97719611 - 97720760 3 279

CTG ...

LKK ...

12063 15 - 76455777 - 76455887 2 39

ATG ...

MTQ ...

12066 15 - 76188013 - 76188320 3 210

GTG ...

VSL ...

12068 15 + 85382960 - 85387004 2 39

ATG ...

MAN ...

12070 15 - 101709018 - 101709778 2 105

CTG ...

LKL ...

12072 1 - 128372141 - 128372173 1 33

CTG ...

LEL ...

12074 15 - 101950467 - 101950934 2 123

TTG ...

LLR ...

12076 15 - 101690467 - 101690861 3 291

CTG ...

LLL ...

12078 15 - 77763281 - 77763948 2 207

ATG ...

MRM ...

12080 15 - 101690467 - 101690858 3 288

TTG ...

LLS ...

12082 15 + 78929740 - 78930028 2 96

ATG ...

MGP ...

12084 15 - 97719611 - 97726524 4 297

ATG ...

MNI ...

12086 15 + 74958357 - 74958550 2 90

CTG ...

LYH ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5