Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11878 15 - 76186745 - 76187797 3 180

CTG ...

LPP ...

11880 15 - 101847586 - 101847881 2 171

TTG ...

LSC ...

11882 15 - 11986552 - 11991026 2 81

GTG ...

VRL ...

11885 15 - 74762577 - 74762816 2 78

GTG ...

VPT ...

11887 1 - 120116351 - 120116434 1 84

TTG ...

LDL ...

11889 15 + 78929701 - 78930028 2 135

ATG ...

MET ...

11892 15 - 76188013 - 76188314 3 204

CTG ...

LRL ...

11894 15 - 94585501 - 94586398 2 84

ATG ...

MNG ...

11897 15 + 74716088 - 74716416 2 72

CTG ...

LQP ...

11899 15 - 81711514 - 81711707 2 111

ATG ...

MLP ...

11901 1 + 143783967 - 143784011 1 45

TTG ...

LPR ...

11904 15 - 36601398 - 36602980 2 147

TTG ...

LDD ...

11906 15 - 74762577 - 74762879 3 141

TTG ...

LTD ...

11908 15 + 99406614 - 99407290 2 87

TTG ...

LSS ...

11911 15 + 74716070 - 74716416 2 90

CTG ...

LSE ...

11913 15 + 59316068 - 59317832 2 99

TTG ...

LAS ...

11916 15 - 101951780 - 101952251 2 81

ATG ...

MIL ...

11918 15 - 96690080 - 96691226 4 267

CTG ...

LTT ...

11920 15 + 39025826 - 39030846 2 69

TTG ...

LAS ...

11922 15 + 74958282 - 74958550 2 165

GTG ...

VLL ...

11925 15 - 97719611 - 97720852 4 294

GTG ...

VLA ...

11927 15 - 101951780 - 101952245 2 75

TTG ...

LWS ...

11929 15 - 101846374 - 101846863 2 69

TTG ...

LPH ...

11931 15 - 36601398 - 36602983 2 150

TTG ...

LLD ...

11933 15 - 76188013 - 76188308 3 198

CTG ...

LSL ...

11935 15 - 96695508 - 96697991 2 72

ATG ...

MRL ...

11937 15 - 101950467 - 101950931 2 120

CTG ...

LRS ...

11939 15 - 101847586 - 101848128 3 240

TTG ...

LTS ...

11941 15 - 74762577 - 74763535 3 138

TTG ...

LSW ...

11943 15 - 74762577 - 74762921 3 183

GTG ...

VTN ...

11945 15 - 31597554 - 31598100 3 123

ATG ...

MTC ...

11948 15 - 96691752 - 96692438 3 177

GTG ...

VLS ...

11950 15 - 97719611 - 97720155 2 111

GTG ...

VRI ...

11952 15 - 96691752 - 96692456 3 195

GTG ...

VLK ...

11954 1 - 184822331 - 184822399 1 69

CTG ...

LTT ...

11956 15 - 81711514 - 81711704 2 108

CTG ...

LPW ...

11958 1 + 34863034 - 34863078 1 45

TTG ...

LVR ...

11960 15 + 59316092 - 59317832 2 75

CTG ...

LNQ ...

11962 15 - 101951780 - 101952287 2 117

ATG ...

MTR ...

11964 15 - 101847586 - 101848146 3 258

ATG ...

MPS ...

11966 15 - 77763281 - 77763828 2 87

TTG ...

LHS ...

11968 15 + 99406623 - 99407290 2 78

TTG ...

LIL ...

11970 15 + 59316032 - 59317832 2 135

CTG ...

LPS ...

11972 15 + 103294745 - 103296595 2 96

CTG ...

LPL ...

11974 15 - 76186745 - 76187752 2 135

ATG ...

MFG ...

11976 15 + 100171622 - 100173235 2 120

GTG ...

VSR ...

11978 15 - 101847586 - 101847884 2 174

ATG ...

MLS ...

11980 15 + 74716034 - 74716416 2 126

GTG ...

VLF ...

11982 15 - 77792270 - 77797075 4 246

GTG ...

VFS ...

11984 15 - 36601398 - 36602914 2 81

ATG ...

MFT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5