Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11768 15 - 101953271 - 101953351 1 81

GTG ...

VHL ...

11770 15 + 25736622 - 25736672 1 51

CTG ...

LDR ...

11773 15 - 81716563 - 81716601 1 39

ATG ...

MTE ...

11775 15 - 38297710 - 38297745 1 36

CTG ...

LRL ...

11778 15 - 76175706 - 76175816 1 111

ATG ...

MAR ...

11780 1 - 13569868 - 13570008 1 141

TTG ...

LVS ...

11782 15 - 101647028 - 101647120 1 93

CTG ...

LWH ...

11785 15 - 101690280 - 101690576 1 297

CTG ...

LAV ...

11787 15 + 39025841 - 39025870 1 30

CTG ...

LKN ...

11789 15 - 81377734 - 81377772 1 39

ATG ...

MLP ...

11791 15 + 81899191 - 81899250 1 60

CTG ...

LEA ...

11794 15 - 34442696 - 34442731 1 36

GTG ...

VGS ...

11797 1 + 24704893 - 24704922 1 30

ATG ...

MRT ...

11800 15 - 36600896 - 36600976 1 81

ATG ...

MEN ...

11802 15 - 81716598 - 81716678 1 81

GTG ...

VSP ...

11804 15 - 101676418 - 101676489 1 72

CTG ...

LAA ...

11806 15 - 101951780 - 101951830 1 51

ATG ...

MRF ...

11808 15 - 83138287 - 83138364 1 78

ATG ...

MPG ...

11810 1 - 86357068 - 86357151 1 84

ATG ...

MRM ...

11812 15 - 97720617 - 97720760 1 144

CTG ...

LKK ...

11814 15 + 100207783 - 100207836 1 54

TTG ...

LSI ...

11816 15 + 34099488 - 34099544 1 57

ATG ...

MDG ...

11818 15 - 51971812 - 51971844 1 33

CTG ...

LWI ...

11820 15 - 101691373 - 101691444 1 72

ATG ...

MPG ...

11822 15 + 74716434 - 74716526 1 93

GTG ...

VRM ...

11824 15 - 97726408 - 97726566 1 159

GTG ...

VIA ...

11826 15 + 74716034 - 74716132 1 99

GTG ...

VLF ...

11828 15 - 89583378 - 89583446 1 69

ATG ...

MTL ...

11830 15 - 101710750 - 101710797 1 48

ATG ...

MRM ...

11832 15 + 100171622 - 100171726 1 105

GTG ...

VSR ...

11834 15 - 77812802 - 77813014 1 213

GTG ...

VNK ...

11836 15 - 101846894 - 101846926 1 33

TTG ...

LPD ...

11838 15 - 77792270 - 77792386 1 117

CTG ...

LLS ...

11840 15 - 101676357 - 101676461 1 105

GTG ...

VFS ...

11842 15 - 82337379 - 82337414 1 36

GTG ...

VWR ...

11845 15 + 89369882 - 89369923 1 42

TTG ...

LQD ...

11848 1 - 45427008 - 45427037 1 30

ATG ...

MKN ...

11850 1 + 17619799 - 17619864 1 66

TTG ...

LQN ...

11852 15 - 36602828 - 36602980 1 153

TTG ...

LDD ...

11854 15 + 25971898 - 25971942 1 45

CTG ...

LRR ...

11856 15 + 25726468 - 25726527 1 60

CTG ...

LGV ...

11858 15 + 74958282 - 74958392 1 111

GTG ...

VLL ...

11860 15 + 79525810 - 79525845 1 36

CTG ...

LDQ ...

11863 15 - 56681886 - 56681936 1 51

CTG ...

LRT ...

11865 15 + 37336320 - 37336349 1 30

TTG ...

LQT ...

11868 15 - 77768931 - 77769002 1 72

GTG ...

VPG ...

11870 15 - 101690280 - 101690534 1 255

GTG ...

VAS ...

11872 15 - 101676357 - 101676653 1 297

GTG ...

VAS ...

11874 15 - 97719611 - 97726509 4 282

CTG ...

LLK ...

11876 15 - 97713879 - 97714534 2 48

ATG ...

MKG ...

Previous 102 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5