Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11661 15 - 101358694 - 101358735 1 42

ATG ...

MLS ...

11663 15 - 101676357 - 101676602 1 246

CTG ...

LVA ...

11665 15 - 11990955 - 11991029 1 75

CTG ...

LVR ...

11667 15 - 77812802 - 77813065 1 264

GTG ...

VGE ...

11669 15 - 81377734 - 81377769 1 36

CTG ...

LPS ...

11672 15 - 102709443 - 102709499 1 57

ATG ...

MRS ...

11675 15 - 36600831 - 36601004 1 174

GTG ...

VDE ...

11677 15 - 36605470 - 36605547 1 78

ATG ...

MKM ...

11679 15 - 36605470 - 36605526 1 57

ATG ...

MDL ...

11681 15 - 101676357 - 101676641 1 285

CTG ...

LAV ...

11683 15 - 74996448 - 74996483 1 36

CTG ...

LCY ...

11685 15 + 89085292 - 89085351 1 60

CTG ...

LQT ...

11688 15 - 99780518 - 99780622 1 105

ATG ...

MWE ...

11690 15 - 83138287 - 83138373 1 87

GTG ...

VSK ...

11693 15 - 11984246 - 11984275 1 30

ATG ...

MEP ...

11696 15 - 11990914 - 11991045 1 132

GTG ...

VKK ...

11698 15 - 101690280 - 101690570 1 291

GTG ...

VAE ...

11700 15 + 102326472 - 102326546 1 75

GTG ...

VVQ ...

11702 15 - 101849055 - 101849117 1 63

ATG ...

MGA ...

11704 15 - 101712491 - 101712658 1 168

TTG ...

LWS ...

11706 15 - 101953271 - 101953336 1 66

CTG ...

LPS ...

11708 15 - 99780272 - 99780319 1 48

ATG ...

MRT ...

11710 15 + 34099497 - 34099544 1 48

CTG ...

LLK ...

11712 1 - 182326310 - 182326342 1 33

TTG ...

LPL ...

11714 15 - 11990955 - 11991026 1 72

GTG ...

VRL ...

11716 1 - 161244175 - 161244255 1 81

TTG ...

LGM ...

11718 15 - 77959961 - 77959990 1 30

GTG ...

VLC ...

11720 1 - 86356526 - 86356591 1 66

ATG ...

MTK ...

11722 15 - 77812872 - 77812943 1 72

GTG ...

VPQ ...

11724 15 + 74716070 - 74716132 1 63

CTG ...

LSE ...

11726 15 + 34277452 - 34277520 1 69

TTG ...

LEL ...

11728 15 - 96690080 - 96690223 1 144

GTG ...

VFS ...

11730 15 - 101676357 - 101676635 1 279

GTG ...

VAE ...

11732 15 - 36790821 - 36790865 1 45

ATG ...

MRR ...

11734 15 - 101676418 - 101676480 1 63

GTG ...

VPC ...

11736 15 - 101848981 - 101849010 1 30

GTG ...

VTS ...

11738 15 + 100186302 - 100186346 1 45

GTG ...

VCD ...

11740 15 - 77812802 - 77812966 1 165

GTG ...

VED ...

11742 15 + 39025826 - 39025870 1 45

TTG ...

LAS ...

11745 15 - 101680189 - 101680248 1 60

CTG ...

LLL ...

11747 15 - 74762318 - 74762467 1 150

ATG ...

MQR ...

11749 15 - 101690280 - 101690579 1 300

GTG ...

VLA ...

11751 15 - 77812802 - 77813020 1 219

GTG ...

VKV ...

11753 1 + 106953754 - 106953849 1 96

ATG ...

MLF ...

11755 15 - 101850520 - 101850552 1 33

CTG ...

LVV ...

11757 15 - 77789841 - 77789930 1 90

TTG ...

LAT ...

11759 15 - 81329085 - 81329135 1 51

CTG ...

LGG ...

11762 15 + 74958357 - 74958392 1 36

CTG ...

LYH ...

11764 15 + 34277458 - 34277520 1 63

CTG ...

LLQ ...

11766 15 + 74958660 - 74958713 1 54

CTG ...

LGL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5