Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11552 15 - 101679812 - 101679928 1 117

TTG ...

LAS ...

11554 15 - 36600896 - 36600991 1 96

ATG ...

MGR ...

11556 15 - 101709803 - 101709841 1 39

ATG ...

MTF ...

11558 15 - 75901161 - 75901193 1 33

ATG ...

MMQ ...

11560 15 + 59317795 - 59318052 1 258

GTG ...

VQK ...

11562 15 - 101692745 - 101692786 1 42

ATG ...

MKS ...

11564 15 - 74671709 - 74671750 1 42

GTG ...

VWI ...

11566 15 - 83381825 - 83381881 1 57

GTG ...

VVC ...

11568 15 - 101677194 - 101677235 1 42

ATG ...

MPC ...

11570 15 - 101680189 - 101680245 1 57

CTG ...

LLL ...

11572 15 - 101692745 - 101692792 1 48

ATG ...

MKM ...

11574 15 + 74958322 - 74958396 1 75

CTG ...

LWP ...

11576 15 - 97726408 - 97726578 1 171

CTG ...

LSA ...

11578 15 - 97714534 - 97714563 1 30

GTG ...

VVW ...

11580 15 - 83116918 - 83116947 1 30

TTG ...

LRR ...

11583 15 + 74958324 - 74958392 1 69

GTG ...

VAS ...

11585 15 - 101678564 - 101678605 1 42

ATG ...

MKS ...

11587 15 - 101676357 - 101676599 1 243

GTG ...

VAS ...

11589 15 - 36600896 - 36600961 1 66

ATG ...

MLD ...

11591 15 + 103289144 - 103289173 1 30

ATG ...

MME ...

11594 15 - 81716563 - 81716628 1 66

TTG ...

LWL ...

11596 15 + 8147158 - 8147199 1 42

GTG ...

VHY ...

11599 15 - 101679812 - 101679940 1 129

CTG ...

LVV ...

11601 1 - 86357068 - 86357100 1 33

ATG ...

MRK ...

11603 15 - 77762986 - 77763024 1 39

GTG ...

VSW ...

11606 1 + 106881710 - 106881739 1 30

TTG ...

LIP ...

11608 1 - 86356948 - 86357028 1 81

CTG ...

LPQ ...

11610 15 - 101709803 - 101709856 1 54

CTG ...

LAV ...

11612 1 + 161035960 - 161036025 1 66

CTG ...

LFT ...

11614 15 - 6847108 - 6847164 1 57

CTG ...

LCV ...

11617 15 - 77812802 - 77813041 1 240

CTG ...

LVE ...

11620 15 - 101678564 - 101678611 1 48

ATG ...

MKM ...

11622 15 - 77792270 - 77792362 1 93

CTG ...

LGS ...

11625 1 - 93417539 - 93417589 1 51

CTG ...

LEP ...

11627 15 - 96691690 - 96691755 1 66

CTG ...

LTF ...

11629 15 - 101676357 - 101676644 1 288

GTG ...

VLA ...

11631 15 + 76904879 - 76905040 1 162

TTG ...

LSG ...

11633 15 - 75901161 - 75901190 1 30

ATG ...

MQK ...

11635 15 - 101676418 - 101676507 1 90

TTG ...

LQT ...

11637 15 + 59323846 - 59323989 1 144

CTG ...

LVN ...

11639 15 - 77785089 - 77785124 1 36

CTG ...

LIS ...

11641 1 - 63160867 - 63160968 1 102

GTG ...

VVS ...

11644 15 - 101679812 - 101679919 1 108

GTG ...

VVE ...

11646 15 - 56681886 - 56681918 1 33

CTG ...

LTT ...

11649 15 - 101690280 - 101690552 1 273

GTG ...

VAS ...

11651 15 - 101692519 - 101692548 1 30

TTG ...

LNC ...

11653 15 - 101846966 - 101847016 1 51

ATG ...

MLS ...

11655 15 + 100207792 - 100207836 1 45

CTG ...

LRP ...

11657 15 - 77789841 - 77789921 1 81

TTG ...

LPS ...

11659 15 - 99780518 - 99780637 1 120

CTG ...

LGR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5