Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11438 15 - 101679812 - 101679934 1 123

GTG ...

VAL ...

11440 15 + 102460503 - 102460688 1 186

GTG ...

VSS ...

11443 15 - 89583378 - 89583440 1 63

TTG ...

LFT ...

11446 15 - 76303230 - 76303262 1 33

CTG ...

LKP ...

11449 15 - 83379676 - 83379711 1 36

GTG ...

VRR ...

11451 15 - 77789841 - 77789945 1 105

CTG ...

LGS ...

11454 15 + 102460536 - 102460688 1 153

GTG ...

VSR ...

11456 15 - 103200817 - 103200894 1 78

ATG ...

MIS ...

11458 1 - 135884944 - 135885054 1 111

ATG ...

MSS ...

11460 15 - 36602828 - 36602983 1 156

TTG ...

LLD ...

11462 15 - 97726408 - 97726581 1 174

ATG ...

MLS ...

11464 15 - 101850520 - 101850588 1 69

GTG ...

VGD ...

11466 15 - 97726408 - 97726545 1 138

ATG ...

MMT ...

11468 15 - 51969998 - 51970105 1 108

TTG ...

LTV ...

11470 15 - 101690280 - 101690537 1 258

CTG ...

LVA ...

11472 15 + 100186290 - 100186346 1 57

GTG ...

VPT ...

11475 15 - 97713777 - 97713863 1 87

CTG ...

LAF ...

11477 15 + 59317850 - 59318068 1 219

GTG ...

VST ...

11479 15 - 57878486 - 57878542 1 57

CTG ...

LGP ...

11482 15 + 100175208 - 100175255 1 48

GTG ...

VHC ...

11484 15 - 36600896 - 36600958 1 63

TTG ...

LDE ...

11487 15 - 101850520 - 101850591 1 72

GTG ...

VVG ...

11489 15 - 51842528 - 51842578 1 51

CTG ...

LRL ...

11492 15 - 51969998 - 51970108 1 111

TTG ...

LLT ...

11494 15 - 74762747 - 74762791 1 45

CTG ...

LPV ...

11496 15 - 11986513 - 11986548 1 36

ATG ...

MSV ...

11498 15 - 76187633 - 76187689 1 57

GTG ...

VTA ...

11500 15 - 66948375 - 66948440 1 66

GTG ...

VWD ...

11503 15 + 34277446 - 34277520 1 75

CTG ...

LRL ...

11506 15 - 81716563 - 81716622 1 60

CTG ...

LAE ...

11509 1 + 106949137 - 106949259 1 123

ATG ...

MNF ...

11511 15 + 102460599 - 102460688 1 90

GTG ...

VPR ...

11513 15 + 59323924 - 59323989 1 66

TTG ...

LPR ...

11515 15 - 101954118 - 101954174 1 57

GTG ...

VFC ...

11517 15 - 101691373 - 101691414 1 42

ATG ...

MPC ...

11519 15 - 77789841 - 77789897 1 57

CTG ...

LTR ...

11521 15 - 101850520 - 101850561 1 42

GTG ...

VGV ...

11523 15 - 103205629 - 103205658 1 30

CTG ...

LRR ...

11525 15 + 74958291 - 74958392 1 102

ATG ...

MYR ...

11527 15 - 74671709 - 74671753 1 45

CTG ...

LVW ...

11530 15 - 101709803 - 101709847 1 45

ATG ...

MAM ...

11532 15 - 101677194 - 101677265 1 72

ATG ...

MPG ...

11534 15 - 96698178 - 96698258 1 81

ATG ...

MPT ...

11537 15 - 101846966 - 101847013 1 48

CTG ...

LSS ...

11539 15 - 99780319 - 99780384 1 66

CTG ...

LGG ...

11541 15 + 59316092 - 59316139 1 48

CTG ...

LNQ ...

11543 15 + 100171637 - 100171726 1 90

CTG ...

LGH ...

11545 15 + 99406608 - 99406757 1 150

GTG ...

VAL ...

11547 15 - 36608310 - 36608381 1 72

CTG ...

LQG ...

11549 1 + 45311758 - 45311832 1 75

TTG ...

LCK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5