Metam
ORF

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H.sapiens

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

1112 10 - 56358429 - 56358908 3 267

GTG ...

VRE ...

1115 10 - 56358683 - 56358954 3 51

CTG ...

LAG ...

1118 10 - 56358429 - 56358964 4 219

ATG ...

MLT ...

1120 10 - 56358418 - 56358968 4 234

CTG ...

LHA ...

1122 10 - 56358429 - 56358979 4 234

ATG ...

MHN ...

1124 10 - 56358429 - 56358982 4 237

CTG ...

LMH ...

1126 10 - 56358429 - 56359030 4 285

CTG ...

LGV ...

1128 10 - 56358429 - 56359042 4 297

CTG ...

LSP ...

1130 10 - 56358895 - 56359560 3 138

TTG ...

LVF ...

1132 10 - 56358905 - 56359706 3 120

TTG ...

LSS ...

1134 10 - 56359812 - 56360059 2 84

CTG ...

LLR ...

1136 10 - 5766071 - 5766293 2 135

TTG ...

LLA ...

1139 10 - 5786045 - 5794935 2 57

GTG ...

VEK ...

1142 10 - 5786045 - 5794947 2 69

TTG ...

LSI ...

1144 10 - 5786045 - 5794959 2 81

CTG ...

LKG ...

1146 10 + 58277258 - 58287627 2 132

ATG ...

MLL ...

1149 10 + 58277264 - 58287627 2 126

TTG ...

LTW ...

1151 10 + 58277291 - 58287627 2 99

CTG ...

LCT ...

1153 10 + 58385568 - 58386303 2 165

GTG ...

VGR ...

1156 10 + 58385582 - 58386281 2 129

GTG ...

VPW ...

1158 10 + 58385597 - 58386281 2 114

CTG ...

LEQ ...

1160 10 + 58385610 - 58386303 2 123

GTG ...

VHR ...

1163 10 + 58385619 - 58386303 2 114

CTG ...

LWK ...

1165 10 + 58385621 - 58386281 2 90

GTG ...

VEV ...

1167 10 + 58390823 - 58394367 2 48

CTG ...

LKD ...

1170 10 - 59807034 - 59812649 2 60

CTG ...

LLS ...

1173 10 + 60785756 - 60788129 2 102

CTG ...

LVS ...

1176 10 + 60788148 - 60791893 2 87

TTG ...

LMT ...

1178 10 + 60788151 - 60791893 2 84

ATG ...

MTK ...

1180 10 + 60788175 - 60791893 2 60

CTG ...

LIL ...

1182 10 + 60788181 - 60791893 2 54

TTG ...

LAL ...

1184 10 + 60788187 - 60791893 2 48

TTG ...

LPE ...

1186 10 + 60788199 - 60791893 2 36

TTG ...

LEY ...

1188 10 + 60792014 - 60792242 2 135

ATG ...

MGI ...

1191 10 + 60792152 - 60793975 2 237

TTG ...

LGT ...

1193 10 + 60792173 - 60793975 2 216

GTG ...

VWP ...

1195 10 + 60792185 - 60793975 2 204

GTG ...

VES ...

1197 10 + 60792249 - 60793886 2 51

ATG ...

MSK ...

1199 10 + 60792260 - 60793975 2 129

TTG ...

LDE ...

1201 10 + 60792264 - 60793886 2 36

ATG ...

MKM ...

1203 10 + 60792275 - 60793975 2 114

TTG ...

LDL ...

1205 10 + 60792281 - 60793975 2 108

TTG ...

LLS ...

1207 10 + 68339520 - 68341365 2 228

TTG ...

LPF ...

1210 10 + 68749223 - 68749681 2 201

ATG ...

MTE ...

1213 10 + 68749256 - 68749681 2 168

ATG ...

MIE ...

1215 10 + 68963417 - 68965419 2 96

TTG ...

LRN ...

1218 10 + 68963429 - 68965419 2 84

ATG ...

MGN ...

1220 10 + 68965460 - 68967021 2 39

TTG ...

LFL ...

1222 10 + 68972015 - 68973551 2 45

CTG ...

LRL ...

1224 10 + 68972021 - 68973551 2 39

TTG ...

LIW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unitary_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS