Transcript 461924

Transcript

ID CARD

MetamORF ID

461924

ENSMUST00000179301

Name

Tnpo1-204

Strand

Biotype

protein_coding

Start-end positions

98849223-98890998

CDS Start-stop positions

-98890781

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:238799

Aliases

AU021749,
D13Ertd688e, ENSMUSG00000009470, IPO2,
Kpnb2, MGI:2681523, MIP,
MIP1, NCBI:238799, OFF:Tnpo1,
Tnpo1, TRN

Chr 13

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
338845	36	TTG ...	LMM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
462515	66	ATG ...	MCQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
671150	75	TTG ...	LTY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	3T3, E14
1041945	30	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
463271	33	ATG ...	MMM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
671410	84	TTG ...	LWL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	3T3, E14
1304825	84	AGG ...	RDT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
462882	51	TTG ...	LCV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
1304537	54	ACG ...	TMM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	E14
464041	45	CTG ...	LAS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	3T3, E14, Spleen_B_cell
1302581	60	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
1305817	51	ATA ...	IAT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
463866	66	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
462479	72	ATG ...	MGL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	Spleen_B_cell
464123	66	CTG ...	LIK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Spleen_B_cell
335365	45	ATG ...	MTK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
942705	126	ATA ...	IYG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	E14
670208	63	TTG ...	LPQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	3T3
1304621	63	ATA ...	IKR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	E14
10280	81	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1302706	63	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
1304887	51	ATA ...	IAT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
1304607	57	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
1303588	45	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
337129	48	ATG ...	MMT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell
338677	51	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, Spleen_B_cell

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