Transcript 2877 | MetamORF

Transcript

ID CARD

MetamORF ID

2877

ENSMUST00000140246

Name

Tmem43-202

Strand

Biotype

retained_intron

Start-end positions

91473759-91479140

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:74122

Aliases

1200015A22Rik,
ENSMUSG00000030095, LUMA, MGI:1921372,
NCBI:74122, OFF:Tmem43, Tmem43

Chr 6

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3180	111	GTG ...	VVS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, R1E, Skin_tumor, Testis
68626	96	TTG ...	LSD ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
70091	60	GTG ...	VKL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
907742	63	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
907801	144	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
3202	120	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E, Skin_tumor, Testis
68379	42	GTG ...	VEM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
3001	108	GTG ...	VSP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E, Skin_tumor, Testis
204136	51	TTG ...	LQR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
909692	75	ACG ...	TRS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
2876	60	CTG ...	LVH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor
3036	69	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
908823	135	ATT ...	IPR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
3287	150	CTG ...	LKT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, R1E, Skin_tumor, Testis
415434	57	CTG ...	LWQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12
68464	54	CTG ...	LRR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, Testis
908645	39	ATT ...	IPV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC

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