Transcript 11914 | MetamORF

Transcript

ID CARD

MetamORF ID

11914

ENSMUST00000100640

Name

Sqle-202

Strand

Biotype

protein_coding

Start-end positions

59315107-59331192

CDS Start-stop positions

59315845-59330917

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:20775

Aliases

AI323792,
ENSMUSG00000022351, MGI:109296, NCBI:20775,
OFF:Sqle, Sqle

Chr 15

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
470768	144	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
366233	165	TTG ...	LAA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
357031	282	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
11960	75	CTG ...	LNQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
1405560	132	TTG ...	LQS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
359388	204	ATG ...	MRG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
12096	114	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
362774	102	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
469703	30	TTG ...	LAG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
356580	108	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
359331	132	ATG ...	MHH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
365859	267	ATG ...	MSP ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
355065	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
1406860	54	CTG ...	LYC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
471065	60	ATG ...	MKK ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
361855	276	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
360741	120	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
363741	240	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
11970	135	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Skin_tumor
471577	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
472928	150	GTG ...	VCD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, v6-5
1407079	51	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
11913	99	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
354891	42	ATG ...	MLG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	BMDC, Glioma, Liver, MEF, MESC
359505	39	CTG ...	LGT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
472212	141	CTG ...	LVT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
470341	273	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
1352688	81	ATG ...	MDS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
355605	138	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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