Gene NCBI:20775 | MetamORF

Gene

ID CARD

NCBI:20775

Aliases

AI323792
ENSMUSG00000022351, MGI:109296, NCBI:20775
OFF:Sqle, Sqle

Chromosome

Transcripts

108 ORFs
4 known transcripts
187 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

11306

ENSMUST00000162142

Sqle-204

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
355065	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, v6-5
949528	150	ATT ...	ILI ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1352688	81	ATG ...	MDS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
362079	72	TTG ...	LWR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
687405	219	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
469564	42	CTG ...	LPW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, NSC
470341	273	CTG ...	LPP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
471167	81	CTG ...	LSC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
471916	126	CTG ...	LRH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
687014	147	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
358793	180	GTG ...	VGS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, NSC, R1E, v6-5
686744	177	TTG ...	LRR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
1044466	153	TTG ...	LAA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E
1616767	51	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1766425	78	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
11541	48	CTG ...	LNQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, Skin_tumor
354848	144	CTG ...	LGD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
789166	39	CTG ...	LNE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5
361504	48	CTG ...	LDN ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
362774	102	ATG ...	MTM ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
1766507	105	TTG ...	LLE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
11513	66	TTG ...	LPR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E, Skin_tumor, v6-5
948254	240	ATT ...	IHS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
360343	108	TTG ...	LRS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
357540	168	GTG ...	VLG ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
361502	51	GTG ...	VKL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
789783	93	CTG ...	LKD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
360477	147	CTG ...	LLL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, NSC, v6-5
359331	132	ATG ...	MHH ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, v6-5
360741	120	CTG ...	LSP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
357031	282	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
686240	63	GTG ...	VNV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
355605	138	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
360524	72	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
949709	102	TTG ...	LEK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
789436	45	GTG ...	VAI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1044386	87	CTG ...	LEA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E
471026	144	CTG ...	LSA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, NSC
1492991	54	GTG ...	VCL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1143780	36	GTG ...	VEL ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
354891	42	ATG ...	MLG ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E
470751	30	GTG ...	VET ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
11560	258	GTG ...	VQK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Skin_tumor, v6-5
949843	72	ATC ...	IEV ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
1044392	78	GTG ...	VQS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
359388	204	ATG ...	MRG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
355848	165	GTG ...	VRA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
356862	57	CTG ...	LVC ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC
11637	144	CTG ...	LVN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1044294	102	CTG ...	LKE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E
979425	42	GTG ...	VDF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, v6-5
1044444	96	CTG ...	LSE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
359505	39	CTG ...	LGT ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E
11477	219	GTG ...	VST ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
11305	69	ATG ...	MYW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
469703	30	TTG ...	LAG ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E
1353790	87	TTG ...	LRM ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, NSC
470768	144	CTG ...	LLV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5
686705	84	CTG ...	LKF ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E, v6-5
472212	141	CTG ...	LVT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, NSC, v6-5
1352316	90	TTG ...	LLR ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, NSC
1043598	120	GTG ...	VTV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, R1E
1493955	48	TTG ...	LLN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	NSC, R1E
470566	60	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
789389	33	TTG ...	LLE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
363107	189	GTG ...	VII ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, NSC, R1E, v6-5
355482	33	TTG ...	LIF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1144470	51	TTG ...	LPR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
359823	69	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
359190	66	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1043721	204	GTG ...	VTD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, NSC, R1E, v6-5
472172	138	GTG ...	VTK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5
11347	60	TTG ...	LVK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
359763	96	ATG ...	MKA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
1143351	30	TTG ...	LLF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	NSC, v6-5
471065	60	ATG ...	MKK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, NSC, v6-5
356580	108	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
356826	96	CTG ...	LTR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1493443	48	TTG ...	LDL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
362986	54	GTG ...	VSI ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, NSC, v6-5
363723	99	TTG ...	LFW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1353544	63	CTG ...	LRT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, NSC, R1E
361855	276	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
361506	87	CTG ...	LLC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
1142158	36	TTG ...	LRT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
471565	189	GTG ...	VGP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, Spleen_B_cell
1353291	51	ATG ...	MVV ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
358263	36	TTG ...	LLI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
363741	240	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1142498	51	TTG ...	LSH ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5

11914

ENSMUST00000100640

Sqle-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
470768	144	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
366233	165	TTG ...	LAA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
357031	282	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
11960	75	CTG ...	LNQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
1405560	132	TTG ...	LQS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
359388	204	ATG ...	MRG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
12096	114	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
362774	102	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
469703	30	TTG ...	LAG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
356580	108	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
359331	132	ATG ...	MHH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
365859	267	ATG ...	MSP ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
355065	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
1406860	54	CTG ...	LYC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
471065	60	ATG ...	MKK ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
361855	276	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
360741	120	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
363741	240	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
11970	135	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Skin_tumor
471577	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
472928	150	GTG ...	VCD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, v6-5
1407079	51	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
11913	99	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
354891	42	ATG ...	MLG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	BMDC, Glioma, Liver, MEF, MESC
359505	39	CTG ...	LGT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
472212	141	CTG ...	LVT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
470341	273	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
1352688	81	ATG ...	MDS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
355605	138	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

470116

ENSMUST00000161953

Sqle-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1353091	48	ATG ...	MNY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
11347	60	TTG ...	LVK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, v6-5
362079	72	TTG ...	LWR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Neutrophil, NSC, Spleen_B_cell, v6-5
686240	63	GTG ...	VNV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, NSC, v6-5
11305	69	ATG ...	MYW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
470566	60	CTG ...	LLK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Neutrophil, Spleen_B_cell, v6-5
685053	36	CTG ...	LTF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, NSC
471916	126	CTG ...	LRH ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1044180	54	TTG ...	LAQ ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
1043786	42	TTG ...	LYE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
1493780	72	ATG ...	MIF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	NSC
470751	30	GTG ...	VET ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, Spleen_B_cell
354848	144	CTG ...	LGD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5

354892

ENSMUST00000022977

Sqle-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
471026	144	CTG ...	LSA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
12096	114	CTG ...	LLC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
1353091	48	ATG ...	MNY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
359388	204	ATG ...	MRG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
365859	267	ATG ...	MSP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
11305	69	ATG ...	MYW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
366233	165	TTG ...	LAA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
11960	75	CTG ...	LNQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
472928	150	GTG ...	VCD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
470341	273	CTG ...	LPP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
360524	72	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
472212	141	CTG ...	LVT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
471065	60	ATG ...	MKK ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Spleen_B_cell
687405	219	GTG ...	VSV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
789436	45	GTG ...	VAI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
355065	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
359505	39	CTG ...	LGT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	B_cell, Spleen_B_cell
789389	33	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
357031	282	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
470751	30	GTG ...	VET ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
360477	147	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
471577	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
789166	39	CTG ...	LNE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, MEF
471167	81	CTG ...	LSC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
356580	108	CTG ...	LPS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
686744	177	TTG ...	LRR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
361506	87	CTG ...	LLC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
363723	99	TTG ...	LFW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
362986	54	GTG ...	VSI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, MEF
1537632	30	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
363741	240	ATG ...	MSP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
361502	51	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
11541	48	CTG ...	LNQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
362774	102	ATG ...	MTM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain
359763	96	ATG ...	MKA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
469703	30	TTG ...	LAG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF Upstream	Liver, Spleen_B_cell
358263	36	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
470768	144	CTG ...	LLV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
687014	147	CTG ...	LPG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
360343	108	TTG ...	LRS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
359331	132	ATG ...	MHH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
361855	276	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
686705	84	CTG ...	LKF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
469564	42	CTG ...	LPW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1181676	255	ATA ...	IRN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
354891	42	ATG ...	MLG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Spleen_B_cell
11913	99	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E
360741	120	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
355848	165	GTG ...	VRA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
11347	60	TTG ...	LVK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
472172	138	GTG ...	VTK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Spleen_B_cell
11970	135	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
355482	33	TTG ...	LIF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
789783	93	CTG ...	LKD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
355605	138	TTG ...	LAA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell

1179597

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
359388	204	ATG ...	MRG ...	Predicted	ATG		1	Samandi2017	sORF
365859	267	ATG ...	MSP ...	Predicted	ATG		1	Samandi2017	sORF
362774	102	ATG ...	MTM ...	Predicted	ATG		1	Samandi2017	sORF
359331	132	ATG ...	MHH ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

108 ORFs
4 known transcripts
187 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

355065

ATG...

MLP...

ATG

Intronic
sORF
Alternative
Upstream

Brain, E14, MEF,
NSC, R1E, v6-5,
B_cell, Glioma, Liver,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	7	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse Johnstone2016

949528

150

ATT...

ILI...

ATT

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1352688

ATG...

MDS...

ATG

Intronic
sORF
InCDS
Overlapping

E14, NSC, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

470768

144

CTG...

LLV...

CTG

sORF
Upstream
Intronic

MEF, Neutrophil, NSC,
v6-5, 3T3, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	4	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

1353091

ATG...

MNY...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

471026

144

CTG...

LSA...

CTG

Alternative
sORF
Upstream
Intronic

3T3, B_cell, Spleen_B_cell,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

11347

TTG...

LVK...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

3T3, E14, MEF,
NSC, v6-5, Skin_tumor,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

12096

114

CTG...

LLC...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, MEF,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse

362079

TTG...

LWR...

TTG

Intronic
sORF

Brain, MEF, R1E,
3T3, E14, Neutrophil,
NSC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq		6	sORFs_org_Mouse

687405

219

GTG...

VSV...

GTG

Intronic
sORF
Alternative
Upstream

MEF, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

366233

165

TTG...

LAA...

TTG

Alternative
InCDS
Overlapping
sORF

E14, MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

469564

CTG...

LPW...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

357031

282

TTG...

LAL...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, 3T3, Brain,
Spleen_B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

11960

CTG...

LNQ...

CTG

Alternative
InCDS
Overlapping
sORF

MEF, Skin_tumor, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

359388

204

ATG...

MRG...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, Glioma, Liver,
MEF, MESC,
E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
1179597	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

365859

267

ATG...

MSP...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, Spleen_B_cell,
BMDC, E14, Glioma,
Liver, MEF, MESC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse Johnstone2016
1179597	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

11305

ATG...

MYW...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, E14, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

470341

273

CTG...

LPP...

CTG

Intronic
sORF
Upstream

BMDC, MEF, 3T3,
B_cell, Spleen_B_cell, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

472928

150

GTG...

VCD...

GTG

InCDS
Overlapping
sORF

Spleen_B_cell, E14, Liver,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse

471167

CTG...

LSC...

CTG

Intronic
sORF
Alternative
Upstream

MEF, Neutrophil, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

471916

126

CTG...

LRH...

CTG

Intronic
sORF

R1E, 3T3, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq		8	sORFs_org_Mouse

1405560

132

TTG...

LQS...

TTG

Alternative
InCDS
Overlapping
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

687014

147

CTG...

LPG...

CTG

Intronic
sORF
Alternative
Upstream

MEF, 3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

360524

TTG...

LAS...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, Brain, MEF,
Spleen_B_cell, E14, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

472212

141

CTG...

LVT...

CTG

sORF
Upstream
Intronic

3T3, B_cell, Spleen_B_cell,
BMDC, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

358793

180

GTG...

VGS...

GTG

Intronic
sORF

Brain, E14, Neutrophil,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		6	sORFs_org_Mouse

686744

177

TTG...

LRR...

TTG

Intronic
sORF
Alternative
Upstream

BMDC, MEF, 3T3,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1044466

153

TTG...

LAA...

TTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1616767

CTG...

LKL...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1766425

TTG...

LLR...

TTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

11541

CTG...

LNQ...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, Neutrophil, Skin_tumor,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

362774

102

ATG...

MTM...

ATG

InCDS
Overlapping
sORF
Intronic

Glioma, Liver, MEF,
MESC, Brain, E14,
NSC, v6-5, 3T3,
B_cell,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	1	Johnstone2016
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
1179597	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

471065

ATG...

MKK...

ATG

Alternative
sORF
Upstream
Intronic

B_cell, MEF, Spleen_B_cell,
Glioma, Liver, MESC,
BMDC, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	1	Johnstone2016
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

354848

144

CTG...

LGD...

CTG

Intronic
sORF

Brain, MEF, R1E,
3T3, E14, Neutrophil,
NSC, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq		7	sORFs_org_Mouse

686240

GTG...

VNV...

GTG

Intronic
sORF

3T3, E14, NSC,
v6-5, MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

789166

CTG...

LNE...

CTG

Intronic
sORF
Upstream

MEF, Neutrophil, NSC,
v6-5, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

789436

GTG...

VAI...

GTG

Alternative
sORF
Upstream
Intronic

B_cell, MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

361504

CTG...

LDN...

CTG

Intronic
sORF

Brain, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

359505

CTG...

LGT...

CTG

sORF
Upstream
Intronic

B_cell, Spleen_B_cell, E14,
MEF, Neutrophil, NSC,
R1E, BMDC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	6	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

1766507

105

TTG...

LLE...

TTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

469703

TTG...

LAG...

TTG

sORF
Upstream
Intronic

BMDC, MEF, Neutrophil,
R1E, Liver, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

11513

TTG...

LPR...

TTG

Intronic
sORF

E14, MEF, NSC,
R1E, Skin_tumor, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		6	sORFs_org_Mouse

789389

TTG...

LLE...

TTG

sORF
Upstream
Intronic

B_cell, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

948254

240

ATT...

IHS...

ATT

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

360343

108

TTG...

LRS...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

356580

108

CTG...

LPS...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, MEF, 3T3,
Brain, Spleen_B_cell, E14,
Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

359331

132

ATG...

MHH...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Glioma, Liver, MEF,
MESC, Brain, E14,
v6-5, 3T3,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
1179597	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

357540

168

GTG...

VLG...

GTG

Intronic
sORF

Brain, E14, MEF,
Neutrophil, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		7	sORFs_org_Mouse

470751

GTG...

VET...

GTG

InCDS
Overlapping
sORF
Intronic

MEF, R1E, 3T3,
E14, NSC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse

361502

GTG...

VKL...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

789783

CTG...

LKD...

CTG

Intronic
sORF
Alternative
Upstream

MEF, Neutrophil, NSC,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

360477

147

CTG...

LLL...

CTG

Intronic
sORF
Upstream

Brain, MEF, Neutrophil,
NSC, v6-5, 3T3,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

360741

120

CTG...

LSP...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, NSC,
Liver, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

355605

138

TTG...

LAA...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, 3T3, Brain,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

470566

CTG...

LLK...

CTG

Intronic
sORF

3T3, Neutrophil, Spleen_B_cell,
v6-5, Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq		4	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

949709

102

TTG...

LEK...

TTG

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1406860

CTG...

LYC...

CTG

Alternative
InCDS
Overlapping
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1044386

CTG...

LEA...

CTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

471577

GTG...

VLY...

GTG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1492991

GTG...

VCL...

GTG

Intronic
sORF

MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1143780

GTG...

VEL...

GTG

Intronic
sORF

E14, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse

685053

CTG...

LTF...

CTG

Intronic
sORF

3T3, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq		2	sORFs_org_Mouse

354891

ATG...

MLG...

ATG

Intronic
sORF
Upstream

BMDC, E14, MEF,
Neutrophil, NSC, R1E,
B_cell, Brain, Spleen_B_cell,
Glioma, Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	7	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

11560

258

GTG...

VQK...

GTG

Intronic
sORF

Brain, E14, MEF,
NSC, Skin_tumor, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		7	sORFs_org_Mouse

949843

ATC...

IEV...

ATC

Intronic
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

1044392

GTG...

VQS...

GTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		6	sORFs_org_Mouse

355848

165

GTG...

VRA...

GTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, NSC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

361855

276

TTG...

LLP...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, 3T3, Brain,
Spleen_B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

361506

CTG...

LLC...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, Brain, MEF,
Spleen_B_cell, E14, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

356862

CTG...

LVC...

CTG

Intronic
sORF

Brain, MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

363723

TTG...

LFW...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, Brain, E14,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

11637

144

CTG...

LVN...

CTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		8	sORFs_org_Mouse

1044294

102

CTG...

LKE...

CTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

1044180

TTG...

LAQ...

TTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	strong	4	sORFs_org_Mouse

363741

240

ATG...

MSP...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

BMDC, 3T3, Brain,
Spleen_B_cell, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

979425

GTG...

VDF...

GTG

Intronic
sORF

E14, Liver, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse

1043786

TTG...

LYE...

TTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse

1044444

CTG...

LSE...

CTG

Intronic
sORF

Brain, E14, MEF,
Neutrophil, NSC, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		7	sORFs_org_Mouse

11970

135

CTG...

LPS...

CTG

Alternative
InCDS
Overlapping
sORF

E14, MEF, Skin_tumor,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

11477

219

GTG...

VST...

GTG

Intronic
sORF

E14, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		8	sORFs_org_Mouse

1353790

TTG...

LRM...

TTG

Intronic
sORF

Brain, E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

686705

CTG...

LKF...

CTG

Intronic
sORF
InCDS
Overlapping

E14, MEF, NSC,
R1E, v6-5, 3T3,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

362986

GTG...

VSI...

GTG

sORF
Upstream
Intronic

B_cell, MEF, Brain,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse

1537632

CTG...

LLG...

CTG

Alternative
InCDS
Overlapping
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1352316

TTG...

LLR...

TTG

Intronic
sORF

Brain, E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

1043598

120

GTG...

VTV...

GTG

Intronic
sORF

E14, Neutrophil, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse

1493955

TTG...

LLN...

TTG

Intronic
sORF

NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		2	sORFs_org_Mouse

363107

189

GTG...

VII...

GTG

Intronic
sORF

Brain, E14, Neutrophil,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		6	sORFs_org_Mouse

355482

TTG...

LIF...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1144470

TTG...

LPR...

TTG

Intronic
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1493780

ATG...

MIF...

ATG

Intronic
sORF

NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
470116	ENSMUST00000161953	Sqle-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

359823

CTG...

LLQ...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

359763

ATG...

MKA...

ATG

InCDS
Overlapping
sORF
Intronic

3T3, Brain, E14,
MEF, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse

358263

TTG...

LLI...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

359190

CTG...

LQP...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1043721

204

GTG...

VTD...

GTG

Intronic
sORF

E14, Neutrophil, NSC,
R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		5	sORFs_org_Mouse

472172

138

GTG...

VTK...

GTG

Intronic
sORF
Upstream

MEF, Neutrophil, NSC,
v6-5, 3T3, B_cell,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

1407079

CTG...

LLQ...

CTG

InCDS
Overlapping
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

11913

TTG...

LAS...

TTG

Alternative
InCDS
Overlapping
sORF

MEF, Skin_tumor, 3T3,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11914	ENSMUST00000100640	Sqle-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1143351

TTG...

LLF...

TTG

Intronic
sORF

NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

356826

CTG...

LTR...

CTG

Intronic
sORF

Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse

1181676

255

ATA...

IRN...

ATA

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
354892	ENSMUST00000022977	Sqle-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1493443

TTG...

LDL...

TTG

Intronic
sORF

MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

1353544

CTG...

LRT...

CTG

Intronic
sORF

E14, NSC, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		3	sORFs_org_Mouse

1142158

TTG...

LRT...

TTG

Intronic
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

471565

189

GTG...

VGP...

GTG

Intronic
sORF

B_cell, MEF, Neutrophil,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq		4	sORFs_org_Mouse

1353291

ATG...

MVV...

ATG

Intronic
sORF

E14, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse

1142498

TTG...

LSH...

TTG

Intronic
sORF

E14, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
11306	ENSMUST00000162142	Sqle-204	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse

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