Transcript 4838 | MetamORF

Transcript

ID CARD

MetamORF ID

4838

ENSMUST00000165724

Name

Ptbp1-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

79859650-79863053

CDS Start-stop positions

-79862475

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:19205

Aliases

AA407203,
AL033359, ENSMUSG00000006498, HNRPI,
MGI:97791, NCBI:19205, OFF:Ptbp1,
pPTB, Ptb, PTB-1,
PTB2, PTB3, PTB4,
Ptbp1

Chr 10

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
514000	117	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
513331	132	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1588845	129	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
7562	105	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, Skin_tumor
514890	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF
85540	162	CTG ...	LAI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
80806	171	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
1565851	144	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
518720	123	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1659946	204	TTG ...	LGG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Skin_tumor
1556697	207	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
755005	219	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1570661	201	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Skin_tumor
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
74267	165	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF
76034	189	CTG ...	LDG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF

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