Gene NCBI:19205 | MetamORF

Gene

ID CARD

NCBI:19205

Aliases

AA407203
AL033359, ENSMUSG00000006498, HNRPI
MGI:97791, NCBI:19205, OFF:Ptbp1
pPTB, Ptb, PTB-1
PTB2, PTB3, PTB4
Ptbp1

Chromosome

Transcripts

75 ORFs
12 known transcripts
202 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

553991

ENSMUST00000095457

Ptbp1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
1332757	150	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
433427	78	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
512800	57	TTG ...	LPS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, v6-5
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, v6-5
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF
516631	75	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, v6-5
524504	63	ATG ...	MIR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
438586	96	CTG ...	LCQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil
514000	117	ATG ...	MEP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, v6-5
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, v6-5
515285	72	CTG ...	LRP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, v6-5
1476296	36	CTG ...	LTC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
525852	81	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1077921	51	GTG ...	VWS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, v6-5
423761	84	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
514890	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, v6-5
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, v6-5
518720	123	ATG ...	MSM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
929518	84	ACG ...	TTS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
513331	132	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
424761	78	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
764375	54	GTG ...	VVW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, v6-5

4838

ENSMUST00000165724

Ptbp1-207

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
514000	117	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
513331	132	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1588845	129	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
7562	105	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, Skin_tumor
514890	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF
85540	162	CTG ...	LAI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
80806	171	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
1565851	144	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
518720	123	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1659946	204	TTG ...	LGG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Skin_tumor
1556697	207	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
755005	219	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1570661	201	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, Skin_tumor
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, MEF
74267	165	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF
76034	189	CTG ...	LDG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF

753844

ENSMUST00000165704

Ptbp1-206

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1077921	51	GTG ...	VWS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
433427	78	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
516631	75	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
515285	72	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
514890	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
764375	54	GTG ...	VVW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
512800	57	TTG ...	LPS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
423761	84	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
826034	81	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
822967	30	TTG ...	LER ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
518720	123	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
438586	96	CTG ...	LCQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
1282891	198	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
755005	219	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
525852	81	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
514000	117	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
513331	132	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
424761	78	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF

1017544

ENSMUST00000057343

Ptbp1-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1565851	144	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
69042	213	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil
64675	33	CTG ...	LRV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
74267	165	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
78317	246	CTG ...	LQA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
85540	162	CTG ...	LAI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC
76849	210	CTG ...	LNG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Neutrophil
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, NSC
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
56479	51	CTG ...	LGE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
7562	105	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
77522	153	CTG ...	LRI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Neutrophil
80806	171	TTG ...	LAP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil
84548	114	CTG ...	LIQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
76034	189	CTG ...	LDG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, Neutrophil

2090

ENSMUST00000169580

Ptbp1-213

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1689780	39	GTG ...	VVW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
2089	72	CTG ...	LQE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
64675	33	CTG ...	LRV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1691728	36	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
826034	81	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
66135	84	GTG ...	VQA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
56479	51	CTG ...	LGE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1688076	51	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
84548	114	CTG ...	LIQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
70618	66	CTG ...	LHN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1686790	123	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1734100	75	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
84198	75	CTG ...	LIE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
75248	96	GTG ...	VEE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF

423762

ENSMUST00000172282

Ptbp1-216

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
1253728	81	ACG ...	TGS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
423761	84	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E, Spleen_B_cell
826034	81	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929518	84	ACG ...	TTS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
514890	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
524504	63	ATG ...	MIR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
518720	123	ATG ...	MSM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
1242558	96	ACG ...	TGT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1282951	204	AGG ...	RTM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
438586	96	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
513331	132	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
512800	57	TTG ...	LPS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E, Spleen_B_cell
525852	81	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E, Spleen_B_cell
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
1282891	198	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1254750	129	AGG ...	RAE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
515285	72	CTG ...	LRP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, Spleen_B_cell
1332757	150	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
764375	54	GTG ...	VVW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
1262369	30	AGG ...	RGR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1832989	156	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
424761	78	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
822967	30	TTG ...	LER ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1232672	45	AGG ...	RCW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
433427	78	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
516631	75	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
514000	117	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

56480

ENSMUST00000165153

Ptbp1-205

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5421	36	GTG ...	VLG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
2089	72	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
80806	171	TTG ...	LAP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
64675	33	CTG ...	LRV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
71772	207	TTG ...	LAA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
69042	213	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
75248	96	GTG ...	VEE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
77522	153	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
84198	75	CTG ...	LIE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
74267	165	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
67937	243	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
85540	162	CTG ...	LAI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
76849	210	CTG ...	LNG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
525852	81	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
78317	246	CTG ...	LQA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
63070	195	CTG ...	LHG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
66135	84	GTG ...	VQA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
67412	264	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
514890	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
4837	33	CTG ...	LGI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
80105	105	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
70618	66	CTG ...	LHN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
61718	261	CTG ...	LQY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
56479	51	CTG ...	LGE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
1588845	129	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
514000	117	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1811613	141	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
84548	114	CTG ...	LIQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
58296	186	GTG ...	VDA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
63637	180	GTG ...	VRI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
76034	189	CTG ...	LDG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, R1E, Testis

576699

ENSMUST00000171216

Ptbp1-214

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
73285	60	CTG ...	LHA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
72702	144	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
71271	63	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3

1326733

ENSMUST00000169091

Ptbp1-211

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
822967	30	TTG ...	LER ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	E14

422469

ENSMUST00000099958

Ptbp1-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell

513927

ENSMUST00000168988

Ptbp1-210

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
78317	246	CTG ...	LQA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Spleen_B_cell
71772	207	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
520214	81	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
506762	84	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
69042	213	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
534916	111	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
422468	72	ATG ...	MQE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
58296	186	GTG ...	VDA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

418503

ENSMUST00000169483

Ptbp1-212

nonsense_mediated_decay

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

418502

264

AAG ...

KNQ ...

Ribo-seq

AAG

sORFs_org_Mouse

C2C12

2987183

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1282891	198	ATG ...	MAA ...	Predicted	ATG		1	Samandi2017	sORF
518720	123	ATG ...	MSM ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

75 ORFs
12 known transcripts
202 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

73285

CTG...

LHA...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

E14, Liver, v6-5,
3T3, Spleen_B_cell, R1E,
Testis, MEF, NSC,
B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

514000

117

ATG...

MEP...

ATG

NMD
sORF
Alternative
InCDS
Overlapping
Intronic

Brain, 3T3, BMDC,
E14, v6-5, R1E,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1077921

GTG...

VWS...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, BMDC,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

5421

GTG...

VLG...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

MEF, Liver, Spleen_B_cell,
R1E, B_cell, 3T3,
E14, v6-5, Brain,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

1689780

GTG...

VVW...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1253728

ACG...

TGS...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1332757

150

CTG...

LLA...

CTG

InCDS
Overlapping
sORF

E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse

423761

CTG...

LLL...

CTG

Alternative
InCDS
Overlapping
sORF

Liver, R1E, Spleen_B_cell,
B_cell, MEF, 3T3,
BMDC, E14, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

534916

111

CTG...

LET...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
NMD

B_cell, MEF, 3T3,
Liver, BMDC, E14,
v6-5, Brain, Neutrophil,
NSC, Spleen_B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
422469	ENSMUST00000099958	Ptbp1-203	processed_transcript	Ribo-seq	strong	2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

433427

ATG...

MSS...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, E14, B_cell,
MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1565851

144

TTG...

LQA...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

R1E, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

822967

TTG...

LER...

TTG

sORF
Alternative
InCDS
Overlapping

E14, B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1326733	ENSMUST00000169091	Ptbp1-211	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

422468

ATG...

MQE...

ATG

ncRNA
sORF
Alternative
InCDS
NMD
Overlapping
Intronic

Spleen_B_cell, MEF, Neutrophil,
NSC, B_cell, Brain,
BMDC, R1E, E14,
Liver, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422469	ENSMUST00000099958	Ptbp1-203	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

2089

CTG...

LQE...

CTG

Intronic
sORF

R1E, MEF, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		3	sORFs_org_Mouse

513331

132

CTG...

LSL...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell, 3T3,
BMDC, E14, v6-5,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

72702

144

ATG...

MAR...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

B_cell, BMDC, E14,
v6-5, MEF, Neutrophil,
Spleen_B_cell, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

826034

CTG...

LCQ...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, MEF, B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

929518

ACG...

TTS...

ACG

Alternative
InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

80806

171

TTG...

LAP...

TTG

Intronic
sORF
NMD
Alternative
InCDS
Overlapping

R1E, Testis, Brain,
MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1588845

129

ATG...

MTG...

ATG

NMD
sORF
Intronic

MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

64675

CTG...

LRV...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Testis, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

506762

CTG...

LLP...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping
ncRNA

3T3, MEF, NSC,
R1E, B_cell, Brain,
E14, Liver, v6-5,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
422469	ENSMUST00000099958	Ptbp1-203	processed_transcript	Ribo-seq	weak	1	sORFs_org_Mouse

71772

207

TTG...

LAA...

TTG

Intronic
sORF

Testis, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq		1	sORFs_org_Mouse

512800

TTG...

LPS...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, E14, Liver,
v6-5, B_cell, MEF,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

69042

213

CTG...

LAL...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

Testis, Neutrophil, Brain,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq		2	sORFs_org_Mouse

75248

GTG...

VEE...

GTG

Intronic
sORF

R1E, Testis, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

514890

CTG...

LLL...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

E14, Liver, Spleen_B_cell,
B_cell, MEF, Brain,
R1E, 3T3, BMDC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

524504

ATG...

MIR...

ATG

Alternative
InCDS
Overlapping
sORF

Spleen_B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

518720

123

ATG...

MSM...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

R1E, Spleen_B_cell, Brain,
B_cell, 3T3, BMDC,
E14, v6-5,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
2987183	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

78317

246

CTG...

LQA...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

Brain, R1E, Spleen_B_cell,
MEF, Neutrophil, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq		3	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1242558

ACG...

TGT...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

77522

153

CTG...

LRI...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

Testis, Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1691728

GTG...

VWS...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse

520214

CTG...

LPW...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
ncRNA
NMD

E14, Liver, MEF,
B_cell, v6-5, R1E,
Brain, Spleen_B_cell, Neutrophil,
NSC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
422469	ENSMUST00000099958	Ptbp1-203	processed_transcript	Ribo-seq	weak	2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1282951

204

AGG...

RTM...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse

438586

CTG...

LCQ...

CTG

Alternative
InCDS
Overlapping
sORF

E14, Spleen_B_cell, 3T3,
BMDC, MEF, Neutrophil,
B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq		6	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq		4	sORFs_org_Mouse

516631

CTG...

LLR...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, MEF, 3T3,
E14, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

84198

CTG...

LIE...

CTG

Intronic
sORF

Testis, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

515285

CTG...

LRP...

CTG

Alternative
InCDS
Overlapping
sORF

B_cell, MEF, 3T3,
E14, Liver, v6-5,
R1E, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

74267

165

ATG...

MAP...

ATG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

R1E, Testis, Neutrophil,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

7562

105

TTG...

LAG...

TTG

NMD
sORF
Alternative
InCDS
Overlapping

MEF, Skin_tumor, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

71271

CTG...

LLH...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

B_cell, MEF, NSC,
E14, Liver, Spleen_B_cell,
R1E, Testis, 3T3,
Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
576699	ENSMUST00000171216	Ptbp1-214	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

764375

GTG...

VVW...

GTG

Alternative
InCDS
Overlapping
sORF

B_cell, Brain, MEF,
E14, R1E, BMDC,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq		5	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse

67937

243

GTG...

VSA...

GTG

Intronic
sORF

R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

66135

GTG...

VQA...

GTG

Intronic
sORF

Brain, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

56479

CTG...

LGE...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

85540

162

CTG...

LAI...

CTG

NMD
sORF
Intronic
Alternative
InCDS
Overlapping

Brain, R1E, Testis,
MEF, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1688076

CTG...

LTT...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse

4837

CTG...

LGI...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

3T3, E14, Liver,
v6-5, R1E, MEF,
B_cell, Spleen_B_cell, Brain,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

84548

114

CTG...

LIQ...

CTG

Intronic
sORF
Alternative
Downstream
NMD

Brain, MEF, R1E,
Testis, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

525852

CTG...

LLL...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, Liver, R1E,
Spleen_B_cell, BMDC, 3T3,
B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

76849

210

CTG...

LNG...

CTG

Intronic
sORF
Downstream
NMD

Testis, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1476296

CTG...

LTC...

CTG

Alternative
InCDS
Overlapping
sORF

BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

70618

CTG...

LHN...

CTG

Intronic
sORF

Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1282891

198

ATG...

MAA...

ATG

Alternative
InCDS
Overlapping
sORF

E14, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse
2987183	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq		2	sORFs_org_Mouse

418502

264

AAG...

KNQ...

AAG

NMD
sORF

C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
418503	ENSMUST00000169483	Ptbp1-212	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1254750

129

AGG...

RAE...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1686790

123

GTG...

VSP...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse

63070

195

CTG...

LHG...

CTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

67412

264

CTG...

LLQ...

CTG

Intronic
sORF

R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

80105

105

GTG...

VKI...

GTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

755005

219

GTG...

VSR...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

B_cell, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq		1	sORFs_org_Mouse
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1659946

204

TTG...

LGG...

TTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

61718

261

CTG...

LQY...

CTG

Intronic
sORF

R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1556697

207

CTG...

LCL...

CTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

58296

186

GTG...

VDA...

GTG

Intronic
sORF

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
513927	ENSMUST00000168988	Ptbp1-210	retained_intron	Ribo-seq		1	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

1570661

201

TTG...

LRP...

TTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1262369

AGG...

RGR...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1832989

156

ATG...

MNL...

ATG

InCDS
Overlapping
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1811613

141

GTG...

VGN...

GTG

Intronic
sORF

R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

63637

180

GTG...

VRI...

GTG

Intronic
sORF

Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		1	sORFs_org_Mouse

424761

CTG...

LLL...

CTG

Alternative
InCDS
Overlapping
sORF

R1E, Spleen_B_cell, 3T3,
E14, v6-5, B_cell,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
553991	ENSMUST00000095457	Ptbp1-202	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
753844	ENSMUST00000165704	Ptbp1-206	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

76034

189

CTG...

LDG...

CTG

NMD
sORF
Intronic
InCDS
Overlapping

MEF, BMDC, R1E,
Testis, Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
4838	ENSMUST00000165724	Ptbp1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
56480	ENSMUST00000165153	Ptbp1-205	retained_intron	Ribo-seq		3	sORFs_org_Mouse
1017544	ENSMUST00000057343	Ptbp1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

1734100

GTG...

VSE...

GTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
2090	ENSMUST00000169580	Ptbp1-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1232672

AGG...

RCW...

AGG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
423762	ENSMUST00000172282	Ptbp1-216	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

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