Transcript 987 | MetamORF

Transcript

ID CARD

MetamORF ID

987

ENSMUST00000135573

Name

Prdx1-204

Strand

Biotype

protein_coding

Start-end positions

116685544-116700822

CDS Start-stop positions

116687418-116699256

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:18477

Aliases

ENSMUSG00000028691,
MGI:99523, MSP23, NCBI:18477,
NkefA, OFF:Prdx1, OSF-3,
OSF3, PAG, Paga,
Prdx1, PrdxI, prx1,
PrxI, Tdpx2, TDX2,
TPxA

Chr 4

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1045	30	ATG ...	MNL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
1233161	108	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
986	30	GTG ...	VSS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, Testis
974043	144	ACG ...	TAL ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF
1230074	156	CTG ...	LAG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
909	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
896589	48	AAG ...	KLQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
810	72	TTG ...	LCV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
899233	57	CTG ...	LSC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	BMDC, MEF
984733	57	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
919	42	GTG ...	VIE ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
896612	108	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
856	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
977104	30	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	E14, MEF

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