Gene NCBI:18477 | MetamORF

Gene

ID CARD

NCBI:18477

Aliases

ENSMUSG00000028691
MGI:99523, MSP23, NCBI:18477
NkefA, OFF:Prdx1, OSF-3
OSF3, PAG, Paga
Prdx1, PrdxI, prx1
PrxI, Tdpx2, TDX2
TPxA

Chromosome

Transcripts

22 ORFs
6 known transcripts
66 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

822348

ENSMUST00000156145

Prdx1-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
57119	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
56880	72	TTG ...	LGI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
57322	39	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell

147622

ENSMUST00000106470

Prdx1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1045	30	ATG ...	MNL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, v6-5
57119	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
413849	39	ATA ...	IEP ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
59255	81	ATG ...	MQK ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
856	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
898282	69	ATG ...	MAW ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, Glioma, Liver, MEF, MESC
57322	39	CTG ...	LLC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
1015799	108	ATG ...	MLC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
986	30	GTG ...	VSS ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, v6-5
896612	108	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
810	72	TTG ...	LCV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver
984733	57	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
919	42	GTG ...	VIE ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, v6-5
909	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, v6-5
896589	48	AAG ...	KLQ ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF

987

ENSMUST00000135573

Prdx1-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1045	30	ATG ...	MNL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
1233161	108	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
986	30	GTG ...	VSS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, Skin_tumor, Spleen_B_cell, Testis
974043	144	ACG ...	TAL ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF
1230074	156	CTG ...	LAG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
909	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
896589	48	AAG ...	KLQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
810	72	TTG ...	LCV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
899233	57	CTG ...	LSC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	BMDC, MEF
984733	57	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
919	42	GTG ...	VIE ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Spleen_B_cell
896612	108	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
856	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
977104	30	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	E14, MEF

413850

ENSMUST00000129315

Prdx1-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
57322	39	CTG ...	LLC ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	sORF	C2C12, MEF, Neutrophil, NSC
59255	81	ATG ...	MQK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
919	42	GTG ...	VIE ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
1015799	108	ATG ...	MLC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
856	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
810	72	TTG ...	LCV ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
56880	72	TTG ...	LGI ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
57119	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
909	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
1045	30	ATG ...	MNL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC
413849	39	ATA ...	IEP ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	sORF	C2C12
1016286	105	TTG ...	LCS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	MEF

56464

ENSMUST00000151129

Prdx1-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1045	30	ATG ...	MNL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Testis
810	72	TTG ...	LCV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Testis
856	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Testis
909	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Testis
57119	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Testis
59255	81	ATG ...	MQK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	BMDC, Testis
57322	39	CTG ...	LLC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	BMDC, MEF, Testis
984733	57	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
56880	72	TTG ...	LGI ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF	BMDC, MEF, Testis
919	42	GTG ...	VIE ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	BMDC, Brain, MEF, Testis

811

ENSMUST00000030454

Prdx1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
856	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	Brain, Liver, Skin_tumor
1045	30	ATG ...	MNL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	Brain, Liver, R1E, Skin_tumor
1016286	105	TTG ...	LCS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
919	42	GTG ...	VIE ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF	Brain, Liver, R1E, Skin_tumor
984733	57	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
57119	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Liver, R1E
1015799	108	ATG ...	MLC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Brain
896589	48	AAG ...	KLQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	Liver
810	72	TTG ...	LCV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	Brain, Liver, R1E, Skin_tumor
57322	39	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
56880	72	TTG ...	LGI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	Liver
909	51	TTG ...	LLS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	Brain, Liver, R1E, Skin_tumor

3054404

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1015799	108	ATG ...	MLC ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

22 ORFs
6 known transcripts
66 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

57119

CTG...

LLP...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

B_cell, E14, Liver,
BMDC, Brain, MEF,
Testis, R1E, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
822348	ENSMUST00000156145	Prdx1-206	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse

1045

ATG...

MNL...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
E14, Liver, MEF,
v6-5, B_cell, Spleen_B_cell,
Testis, R1E, Skin_tumor,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse

1233161

108

CTG...

LLI...

CTG

Alternative
Overlapping
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

57322

CTG...

LLC...

CTG

sORF
Alternative
InCDS
Overlapping
Intronic

C2C12, MEF, Neutrophil,
NSC, BMDC, Testis,
E14, Liver, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
822348	ENSMUST00000156145	Prdx1-206	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

59255

ATG...

MQK...

ATG

sORF
Alternative
InCDS
Overlapping

MEF, Glioma, Liver,
MESC, BMDC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

413849

ATA...

IEP...

ATA

Alternative
InCDS
Overlapping
sORF

BMDC, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

856

TTG...

LTL...

TTG

Alternative
InCDS
Overlapping
sORF

Liver, Brain, Skin_tumor,
MEF, Neutrophil, NSC,
BMDC, Testis, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

986

GTG...

VSS...

GTG

InCDS
Overlapping
sORF

B_cell, Brain, E14,
MEF, NSC, Skin_tumor,
Spleen_B_cell, Testis, 3T3,
BMDC, Liver, R1E,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	moderate	9	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	moderate	12	sORFs_org_Mouse

898282

ATG...

MAW...

ATG

Alternative
sORF
Upstream

BMDC, Glioma, Liver,
MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse Johnstone2016

974043

144

ACG...

TAL...

ACG

Alternative
Overlapping
sORF
Upstream

E14, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse

919

GTG...

VIE...

GTG

sORF
Alternative
InCDS
Overlapping

MEF, Neutrophil, NSC,
Brain, Liver, R1E,
Skin_tumor, B_cell, E14,
Spleen_B_cell, 3T3, v6-5,
BMDC, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

1015799

108

ATG...

MLC...

ATG

sORF
Alternative
InCDS
Overlapping

MEF, Brain,
Glioma, Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3054404	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

1230074

156

CTG...

LAG...

CTG

Alternative
Downstream
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1016286

105

TTG...

LCS...

TTG

sORF

Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

810

TTG...

LCV...

TTG

sORF
Alternative
InCDS
Overlapping

BMDC, Brain, MEF,
Testis, B_cell, Spleen_B_cell,
Neutrophil, NSC, Liver,
R1E, Skin_tumor, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

909

TTG...

LLS...

TTG

Alternative
InCDS
Overlapping
sORF

B_cell, E14, Spleen_B_cell,
BMDC, Brain, MEF,
Testis, Neutrophil, NSC,
3T3, Liver, v6-5,
R1E, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

896589

AAG...

KLQ...

AAG

Alternative
InCDS
Overlapping
sORF

E14, Liver, BMDC,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

899233

CTG...

LSC...

CTG

Alternative
Downstream
sORF

BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

984733

CTG...

LPS...

CTG

sORF
InCDS
Overlapping

MEF, E14, Brain,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

56880

TTG...

LGI...

TTG

Intronic
sORF

B_cell, MEF, Neutrophil,
NSC, Liver, BMDC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
822348	ENSMUST00000156145	Prdx1-206	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
413850	ENSMUST00000129315	Prdx1-203	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse
811	ENSMUST00000030454	Prdx1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
56464	ENSMUST00000151129	Prdx1-205	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

896612

108

CTG...

LPS...

CTG

InCDS
Overlapping
sORF

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
147622	ENSMUST00000106470	Prdx1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

977104

CTG...

LRS...

CTG

sORF
Upstream

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
987	ENSMUST00000135573	Prdx1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

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