Transcript 426420

Transcript

ID CARD

MetamORF ID

426420

ENSMUST00000096744

Name

Myadm-201

Strand

Biotype

protein_coding

Start-end positions

3290534-3299349

CDS Start-stop positions

3296724-3297686

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:50918

Aliases

D7Wsu62e,
ENSMUSG00000068566, MGI:1355332, Myadm,
NCBI:50918, OFF:Myadm

Chr 7

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
424287	75	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
221003	153	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
602570	36	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	3T3, MEF
215252	246	GTG ...	VFL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
215406	135	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
4531	93	CTG ...	LKW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
222016	63	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
4096	114	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
1472636	192	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
599995	57	CTG ...	LQL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF Upstream	3T3, E14, MEF, v6-5
3954	75	GTG ...	VQG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
217147	144	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
3842	99	ATG ...	MPL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
4199	162	ATG ...	MDV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
214771	57	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
597264	177	TTG ...	LFV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
4268	63	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
212075	69	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
213819	171	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
592538	33	TTG ...	LCY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
600115	90	TTG ...	LVC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
602012	51	CTG ...	LSS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, MEF, v6-5
217537	108	GTG ...	VWL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
223944	78	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
223527	144	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1472588	57	TTG ...	LVC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF
214322	84	GTG ...	VWV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
217923	123	TTG ...	LIR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
220362	156	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1690833	153	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	MEF
3967	54	CTG ...	LAI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
594993	171	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
426419	42	TTG ...	LFV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Spleen_B_cell, v6-5
218370	240	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
216748	264	CTG ...	LGH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
226366	171	ATG ...	MAK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
218776	180	GTG ...	VVC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
228049	87	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
602138	66	TTG ...	LCY ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
216524	249	CTG ...	LVF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
415816	186	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
227141	177	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
219482	30	CTG ...	LRC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
211432	126	CTG ...	LPV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1690856	156	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	MEF
1690724	141	CTG ...	LSE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	MEF
589883	156	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
227715	111	TTG ...	LYQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E

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