Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:50918

Aliases

D7Wsu62e
ENSMUSG00000068566, MGI:1355332, Myadm
NCBI:50918, OFF:Myadm

Chromosome

7

Transcripts

83 ORFs
4 known transcripts
190 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

415817 ENSMUST00000203566 Myadm-204 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

416175 60

ATA ...

IIR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
416162 54

ATC ...

ILG ...

Ribo-seq
ATC

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, C2C12
592538 33

TTG ...

LCY ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
913097 48

ATA ...

ISG ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
912307 159

ACG ...

TPL ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
912150 84

ATC ...

IQA ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
223527 144

ATG ...

MPS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
915515 99

CTG ...

LIW ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
216748 264

CTG ...

LGH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
218370 240

CTG ...

LLC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
916308 63

AAG ...

KAE ...

Ribo-seq
AAG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, E14
416322 54

ATC ...

IPR ...

Ribo-seq
ATC

weak

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, C2C12
912786 36

AGG ...

REG ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
597264 177

TTG ...

LFV ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC
217537 108

GTG ...

VWL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
415816 186

CTG ...

LSS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, C2C12
4268 63

GTG ...

VRS ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
602018 51

CTG ...

LSS ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, E14, MEF,
v6-5
3954 75

GTG ...

VQG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416297 78

GTG ...

VGT ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, C2C12
219482 30

CTG ...

LRC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
224211 123

GTG ...

VDS ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416400 60

ATT ...

IQV ...

Ribo-seq
ATT

weak

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
C2C12
214771 57

CTG ...

LCG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
3842 99

ATG ...

MPL ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
214322 84

GTG ...

VWV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
4531 93

CTG ...

LKW ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
218776 180

GTG ...

VVC ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
4199 162

ATG ...

MDV ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
4096 114

TTG ...

LPV ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
416185 123

AAG ...

KGR ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
C2C12
911637 222

ACG ...

TCC ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
415819 33

CTG ...

LQL ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC, C2C12
594303 33

GTG ...

VWQ ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
212171 72

TTG ...

LPA ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
223944 78

GTG ...

VPG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
594993 171

GTG ...

VLQ ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
912449 120

ATC ...

IRD ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
589883 156

CTG ...

LPG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
416240 96

TTG ...

LVL ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    sORF
    Upstream
3T3, C2C12
227141 177

GTG ...

VCG ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
217147 144

CTG ...

LLR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
416012 72

ACG ...

TDS ...

Ribo-seq
ACG

strong

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, C2C12
595368 66

TTG ...

LWS ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, BMDC
215252 246

GTG ...

VFL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
228049 87

TTG ...

LPS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
914074 231

ATT ...

IVP ...

Ribo-seq
ATT

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
226366 171

ATG ...

MAK ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
221003 153

CTG ...

LPS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
597532 138

CTG ...

LQG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
    Upstream
3T3
424287 75

GTG ...

VSR ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
227715 111

TTG ...

LYQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
912741 135

ATC ...

ILH ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
915455 48

AGG ...

RDP ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
600196 78

GTG ...

VCN ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
3967 54

CTG ...

LAI ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
216524 249

CTG ...

LVF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
211432 126

CTG ...

LPV ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
213819 171

CTG ...

LFS ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
601830 96

CTG ...

LIS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
3843 ENSMUST00000164553 Myadm-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

217147 144

CTG ...

LLR ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
227715 111

TTG ...

LYQ ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
594303 33

GTG ...

VWQ ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
220362 156

CTG ...

LLH ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
3967 54

CTG ...

LAI ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Skin_tumor
228049 87

TTG ...

LPS ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
218776 180

GTG ...

VVC ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
224211 123

GTG ...

VDS ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
223944 78

GTG ...

VPG ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
215406 135

CTG ...

LPP ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
214771 57

CTG ...

LCG ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
226366 171

ATG ...

MAK ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
213819 171

CTG ...

LFS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
4096 114

TTG ...

LPV ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Skin_tumor
216524 249

CTG ...

LVF ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
424287 75

GTG ...

VSR ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
3842 99

ATG ...

MPL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Skin_tumor
4199 162

ATG ...

MDV ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Skin_tumor
211432 126

CTG ...

LPV ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
215252 246

GTG ...

VFL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
221003 153

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
416175 60

ATA ...

IIR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
222016 63

CTG ...

LGP ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF
219482 30

CTG ...

LRC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
227141 177

GTG ...

VCG ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
212171 72

TTG ...

LPA ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
3954 75

GTG ...

VQG ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Skin_tumor
217537 108

GTG ...

VWL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
212075 69

GTG ...

VFL ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
4268 63

GTG ...

VRS ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Skin_tumor
223527 144

ATG ...

MPS ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
217923 123

TTG ...

LIR ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
216748 264

CTG ...

LGH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
214322 84

GTG ...

VWV ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
4531 93

CTG ...

LKW ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Skin_tumor
218370 240

CTG ...

LLC ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
211433 ENSMUST00000203328 Myadm-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

211432 126

CTG ...

LPV ...

Ribo-seq
CTG

weak

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Spleen_B_cell, v6-5
215406 135

CTG ...

LPP ...

Ribo-seq
CTG

weak

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
214771 57

CTG ...

LCG ...

Ribo-seq
CTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
216748 264

CTG ...

LGH ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
1258155 69

AGG ...

RLG ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
3967 54

CTG ...

LAI ...

Ribo-seq
CTG

moderate

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5
1252508 54

ACG ...

TTG ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
4199 162

ATG ...

MDV ...

Ribo-seq
ATG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
424287 75

GTG ...

VSR ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
v6-5
1258134 30

AGG ...

RYQ ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
3954 75

GTG ...

VQG ...

Ribo-seq
GTG

weak

10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
4268 63

GTG ...

VRS ...

Ribo-seq
GTG

weak

8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, v6-5
3842 99

ATG ...

MPL ...

Ribo-seq
ATG

weak

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
228049 87

TTG ...

LPS ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
217147 144

CTG ...

LLR ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
912150 84

ATC ...

IQA ...

Ribo-seq
ATC

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1250695 141

AGG ...

RGD ...

Ribo-seq
AGG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
416175 60

ATA ...

IIR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
223527 144

ATG ...

MPS ...

Ribo-seq
ATG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
217923 123

TTG ...

LIR ...

Ribo-seq
TTG

moderate

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, v6-5
216524 249

CTG ...

LVF ...

Ribo-seq
CTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
227715 111

TTG ...

LYQ ...

Ribo-seq
TTG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
212171 72

TTG ...

LPA ...

Ribo-seq
TTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
v6-5
212075 69

GTG ...

VFL ...

Ribo-seq
GTG

moderate

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
601830 96

CTG ...

LIS ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
MEF
911637 222

ACG ...

TCC ...

Ribo-seq
ACG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
913097 48

ATA ...

ISG ...

Ribo-seq
ATA

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
215252 246

GTG ...

VFL ...

Ribo-seq
GTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
224211 123

GTG ...

VDS ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1256431 201

AGG ...

RWT ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1253026 63

ATC ...

IHL ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1256839 114

AGG ...

RPT ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
219482 30

CTG ...

LRC ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Spleen_B_cell, v6-5
218776 180

GTG ...

VVC ...

Ribo-seq
GTG

strong

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
214322 84

GTG ...

VWV ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
4531 93

CTG ...

LKW ...

Ribo-seq
CTG

weak

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
227141 177

GTG ...

VCG ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
217537 108

GTG ...

VWL ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
213819 171

CTG ...

LFS ...

Ribo-seq
CTG

weak

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
4096 114

TTG ...

LPV ...

Ribo-seq
TTG

moderate

9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
221003 153

CTG ...

LPS ...

Ribo-seq
CTG

weak

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
220362 156

CTG ...

LLH ...

Ribo-seq
CTG

weak

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
223944 78

GTG ...

VPG ...

Ribo-seq
GTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
226366 171

ATG ...

MAK ...

Ribo-seq
ATG

strong

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
222016 63

CTG ...

LGP ...

Ribo-seq
CTG

moderate

7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
218370 240

CTG ...

LLC ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
426420 ENSMUST00000096744 Myadm-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

424287 75

GTG ...

VSR ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
221003 153

CTG ...

LPS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
602570 36

GTG ...

VLQ ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF
215252 246

GTG ...

VFL ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
215406 135

CTG ...

LPP ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
4531 93

CTG ...

LKW ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
222016 63

CTG ...

LGP ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
4096 114

TTG ...

LPV ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
1472636 192

CTG ...

LQL ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF
599995 57

CTG ...

LQL ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    sORF
    Upstream
3T3, E14, MEF,
v6-5
3954 75

GTG ...

VQG ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
217147 144

CTG ...

LLR ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
3842 99

ATG ...

MPL ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
4199 162

ATG ...

MDV ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, R1E
214771 57

CTG ...

LCG ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
597264 177

TTG ...

LFV ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF
4268 63

GTG ...

VRS ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
212075 69

GTG ...

VFL ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
213819 171

CTG ...

LFS ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
592538 33

TTG ...

LCY ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, R1E
600115 90

TTG ...

LVC ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, v6-5
602012 51

CTG ...

LSS ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    sORF
    Upstream
3T3, BMDC, MEF,
v6-5
217537 108

GTG ...

VWL ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
223944 78

GTG ...

VPG ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
223527 144

ATG ...

MPS ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1472588 57

TTG ...

LVC ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, MEF
214322 84

GTG ...

VWV ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
217923 123

TTG ...

LIR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
220362 156

CTG ...

LLH ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1690833 153

CTG ...

LQG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
MEF
3967 54

CTG ...

LAI ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
594993 171

GTG ...

VLQ ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF
426419 42

TTG ...

LFV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    sORF
    Upstream
3T3, MEF, Spleen_B_cell,
v6-5
218370 240

CTG ...

LLC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
216748 264

CTG ...

LGH ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
226366 171

ATG ...

MAK ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, R1E
218776 180

GTG ...

VVC ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
228049 87

TTG ...

LPS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
602138 66

TTG ...

LCY ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, MEF, v6-5
216524 249

CTG ...

LVF ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
415816 186

CTG ...

LSS ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF
227141 177

GTG ...

VCG ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
219482 30

CTG ...

LRC ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
211432 126

CTG ...

LPV ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1690856 156

GTG ...

VLQ ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
MEF
1690724 141

CTG ...

LSE ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
MEF
589883 156

CTG ...

LPG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
    Upstream
BMDC, MEF
227715 111

TTG ...

LYQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
3001741 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

4199 162

ATG ...

MDV ...

Predicted
ATG

1 Samandi2017
    sORF
226366 171

ATG ...

MAK ...

Predicted
ATG

1 Samandi2017
    sORF

ORFs

83 ORFs
4 known transcripts
190 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

416175 60

ATA...

IIR...

ATA Alternative
InCDS
Overlapping
sORF
BMDC, E14, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
217147 144

CTG...

LLR...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, R1E,
E14, MEF, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
227715 111

TTG...

LYQ...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, v6-5, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
211432 126

CTG...

LPV...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Liver,
MEF, Spleen_B_cell, v6-5,
BMDC, R1E, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 8 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
215406 135

CTG...

LPP...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5, R1E, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 9 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
424287 75

GTG...

VSR...

GTG Alternative
InCDS
Overlapping
sORF
R1E, E14, MEF,
Spleen_B_cell, v6-5, 3T3,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
416162 54

ATC...

ILG...

ATC Alternative
sORF
Upstream
BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
592538 33

TTG...

LCY...

TTG Alternative
sORF
Upstream
3T3, MEF, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
913097 48

ATA...

ISG...

ATA Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
912307 159

ACG...

TPL...

ACG Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
214771 57

CTG...

LCG...

CTG Alternative
InCDS
Overlapping
sORF
MEF, v6-5, R1E,
BMDC, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
216748 264

CTG...

LGH...

CTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
v6-5, 3T3, R1E,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
221003 153

CTG...

LPS...

CTG Alternative
InCDS
Overlapping
sORF
R1E, BMDC, 3T3,
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 7 sORFs_org_Mouse
4268 63

GTG...

VRS...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
Testis, 3T3, BMDC,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, v6-5,
R1E, Brain, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

72791 ENSMUST00000203600 Prkcg-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 8 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
912150 84

ATC...

IQA...

ATC Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
223527 144

ATG...

MPS...

ATG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
602570 36

GTG...

VLQ...

GTG sORF
Upstream
3T3, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
915515 99

CTG...

LIW...

CTG Alternative
Downstream
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
215252 246

GTG...

VFL...

GTG Alternative
InCDS
Overlapping
sORF
R1E, BMDC, Brain,
E14, MEF, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
594303 33

GTG...

VWQ...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
218370 240

CTG...

LLC...

CTG Alternative
InCDS
Overlapping
sORF
3T3, R1E, BMDC,
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
4531 93

CTG...

LKW...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, R1E, 3T3,
Testis, Brain, E14,
Liver, Neutrophil, Spleen_B_cell,
v6-5, BMDC, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
72791 ENSMUST00000203600 Prkcg-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 9 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
916308 63

AAG...

KAE...

AAG Alternative
sORF
Upstream
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
2 sORFs_org_Mouse
222016 63

CTG...

LGP...

CTG Alternative
InCDS
Overlapping
sORF
R1E, 3T3, BMDC,
Brain, MEF, E14,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
4096 114

TTG...

LPV...

TTG Alternative
InCDS
Overlapping
sORF
MEF, R1E, BMDC,
Skin_tumor, 3T3, Brain,
E14, Liver, Neutrophil,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
1258155 69

AGG...

RLG...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
416322 54

ATC...

IPR...

ATC sORF
Upstream
BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1472636 192

CTG...

LQL...

CTG sORF
Upstream
BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
912786 36

AGG...

REG...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
599995 57

CTG...

LQL...

CTG sORF
Upstream
3T3, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
220362 156

CTG...

LLH...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, R1E,
Brain, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
4199 162

ATG...

MDV...

ATG sORF
Alternative
InCDS
Overlapping
Brain, E14,
Liver, MEF, Neutrophil,
Spleen_B_cell, v6-5, Glioma,
MESC, R1E, 3T3,
BMDC, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3001741 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 9 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
Johnstone2016
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
3954 75

GTG...

VQG...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, R1E, Brain,
E14, Liver, Neutrophil,
Spleen_B_cell, v6-5, 3T3,
Testis, BMDC, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 10 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
72791 ENSMUST00000203600 Prkcg-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
3967 54

CTG...

LAI...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, Skin_tumor,
E14, MEF, Neutrophil,
Spleen_B_cell, v6-5, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 8 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
597264 177

TTG...

LFV...

TTG sORF
Upstream
3T3, BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
228049 87

TTG...

LPS...

TTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, v6-5, 3T3,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
217537 108

GTG...

VWL...

GTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, MEF,
R1E, Brain, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
3842 99

ATG...

MPL...

ATG Alternative
InCDS
Overlapping
sORF
MEF, R1E, Brain,
E14, Liver, Neutrophil,
Spleen_B_cell, v6-5, 3T3,
BMDC, Skin_tumor
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 9 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
218776 180

GTG...

VVC...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, 3T3,
E14, MEF, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
strong 5 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
415816 186

CTG...

LSS...

CTG sORF
Upstream
BMDC, C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
224211 123

GTG...

VDS...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, 3T3,
E14, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
1252508 54

ACG...

TTG...

ACG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
602018 51

CTG...

LSS...

CTG Alternative
sORF
Upstream
3T3, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
7 sORFs_org_Mouse
1258134 30

AGG...

RYQ...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
416297 78

GTG...

VGT...

GTG sORF
Upstream
ncRNA
3T3, C2C12, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
72791 ENSMUST00000203600 Prkcg-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
223944 78

GTG...

VPG...

GTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, R1E,
3T3, E14, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
219482 30

CTG...

LRC...

CTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, Spleen_B_cell,
v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
416400 60

ATT...

IQV...

ATT Alternative
sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
212075 69

GTG...

VFL...

GTG Alternative
InCDS
Overlapping
sORF
R1E, Brain, E14,
MEF, NSC, v6-5,
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
213819 171

CTG...

LFS...

CTG Alternative
InCDS
Overlapping
sORF
R1E, BMDC, Brain,
E14, MEF, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 6 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
214322 84

GTG...

VWV...

GTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, R1E,
MEF, v6-5, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1250695 141

AGG...

RGD...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
226366 171

ATG...

MAK...

ATG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, R1E,
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
Johnstone2016
3001741 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
strong 5 sORFs_org_Mouse
600115 90

TTG...

LVC...

TTG Alternative
sORF
Upstream
3T3, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
217923 123

TTG...

LIR...

TTG Alternative
InCDS
Overlapping
sORF
Brain, E14, MEF,
Neutrophil, v6-5, R1E,
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 7 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
216524 249

CTG...

LVF...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
MEF, v6-5, R1E,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 5 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
602012 51

CTG...

LSS...

CTG sORF
Upstream
3T3, BMDC, MEF,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
416185 123

AAG...

KGR...

AAG sORF
Upstream
C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
911637 222

ACG...

TCC...

ACG Alternative
InCDS
Overlapping
sORF
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
415819 33

CTG...

LQL...

CTG Alternative
sORF
Upstream
3T3, BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
212171 72

TTG...

LPA...

TTG Alternative
InCDS
Overlapping
sORF
3T3, E14, MEF,
Spleen_B_cell, v6-5, BMDC,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 5 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
1472588 57

TTG...

LVC...

TTG Alternative
sORF
Upstream
BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
601830 96

CTG...

LIS...

CTG Overlapping
sORF
Upstream
MEF, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
594993 171

GTG...

VLQ...

GTG sORF
Upstream
3T3, BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
912449 120

ATC...

IRD...

ATC Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
1690833 153

CTG...

LQG...

CTG Overlapping
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
589883 156

CTG...

LPG...

CTG sORF
Upstream
3T3, BMDC, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
1256431 201

AGG...

RWT...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
416240 96

TTG...

LVL...

TTG sORF
Upstream
3T3, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
1253026 63

ATC...

IHL...

ATC Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
1256839 114

AGG...

RPT...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
227141 177

GTG...

VCG...

GTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, MEF, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
3843 ENSMUST00000164553 Myadm-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
211433 ENSMUST00000203328 Myadm-203 protein_coding Ribo-seq
moderate 6 sORFs_org_Mouse
426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
426419 42

TTG...

LFV...

TTG sORF
Upstream
3T3, MEF, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
416012 72

ACG...

TDS...

ACG sORF
Upstream
BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
595368 66

TTG...

LWS...

TTG Alternative
sORF
Upstream
3T3, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
914074 231

ATT...

IVP...

ATT Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
597532 138

CTG...

LQG...

CTG sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
912741 135

ATC...

ILH...

ATC Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
602138 66

TTG...

LCY...

TTG Alternative
sORF
Upstream
3T3, MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
915455 48

AGG...

RDP...

AGG Alternative
sORF
Upstream
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
600196 78

GTG...

VCN...

GTG Overlapping
sORF
Upstream
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

415817 ENSMUST00000203566 Myadm-204 protein_coding Ribo-seq
1 sORFs_org_Mouse
1690856 156

GTG...

VLQ...

GTG Overlapping
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
1690724 141

CTG...

LSE...

CTG Overlapping
sORF
Upstream
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

426420 ENSMUST00000096744 Myadm-201 protein_coding Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5