Transcript 503157

Transcript

ID CARD

MetamORF ID

503157

ENSMUST00000029129

Name

Mtfr1-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

19188265-19219556

CDS Start-stop positions

19200102-19208493

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:67472

Aliases

1300002C08Rik,
1700080D04Rik, 2810026O10Rik, 4930579E05Rik,
Chppr, ENSMUSG00000027601, Fam54a2,
MGI:1914722, Mtfr1, NCBI:67472,
OFF:Mtfr1

Chr 3

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
507171	96	TTG ...	LAT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Spleen_B_cell, v6-5
506039	174	TTG ...	LVL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Spleen_B_cell, v6-5
52711	81	CTG ...	LLW ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, NSC, Spleen_B_cell, v6-5
1375467	36	TTG ...	LQG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1173513	39	CTG ...	LTC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
538365	78	GTG ...	VLE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1374256	111	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
53593	102	GTG ...	VCS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
503968	141	CTG ...	LIK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Spleen_B_cell, v6-5
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1374862	105	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
816683	45	TTG ...	LVA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	NMD sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
506293	111	TTG ...	LHC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
52919	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
816750	69	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
53093	54	CTG ...	LQV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
752094	75	CTG ...	LER ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
52533	51	TTG ...	LTC ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
54609	54	TTG ...	LLT ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
53753	60	CTG ...	LKL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
505304	114	TTG ...	LPF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, NSC, Spleen_B_cell, v6-5
506771	141	TTG ...	LFI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Spleen_B_cell

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