Gene NCBI:67472 | MetamORF

Gene

ID CARD

NCBI:67472

Aliases

1300002C08Rik
1700080D04Rik, 2810026O10Rik, 4930579E05Rik
Chppr, ENSMUSG00000027601, Fam54a2
MGI:1914722, Mtfr1, NCBI:67472
OFF:Mtfr1

Chromosome

Transcripts

41 ORFs
8 known transcripts
108 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

816684

ENSMUST00000138777

Mtfr1-208

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
750220	72	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
816750	69	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative NMD Overlapping sORF Upstream	Glioma, Liver, MEF, MESC
536595	177	ATG ...	MRM ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
816683	45	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
536612	48	ATG ...	MES ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative NMD Overlapping sORF Upstream	Glioma, Liver, MEF, MESC

126976

ENSMUST00000119865

Mtfr1-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53593	102	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
1374862	105	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
52711	81	CTG ...	LLW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
52533	51	TTG ...	LTC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
54609	54	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
52919	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
53093	54	CTG ...	LQV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
53753	60	CTG ...	LKL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver

1171348

ENSMUST00000131053

Mtfr1-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
537349	42	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
538385	36	TTG ...	LLP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
536575	33	CTG ...	LPL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5

3065293

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
536595	177	ATG ...	MRM ...	Predicted	ATG		1	Samandi2017	sORF
54225	93	ATG ...	MDH ...	Predicted	ATG		1	Samandi2017	sORF

413112

ENSMUST00000130806

Mtfr1-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1218408	129	ATG ...	MVW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
52533	51	TTG ...	LTC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	R1E
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	C2C12, E14, MEF, R1E
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	E14, MEF, R1E
53753	60	CTG ...	LKL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF, R1E
52711	81	CTG ...	LLW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	E14, MEF, R1E
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	MEF, R1E
54609	54	TTG ...	LLT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	E14, MEF, R1E
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	MEF, R1E
53593	102	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, R1E
53093	54	CTG ...	LQV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	MEF, R1E
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	C2C12, E14, MEF, R1E

52027

ENSMUST00000132035

Mtfr1-207

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Testis
53093	54	CTG ...	LQV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Testis
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	B_cell, Testis
536612	48	ATG ...	MES ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	B_cell
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Testis
52533	51	TTG ...	LTC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Testis
820288	36	CTG ...	LEN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	B_cell
54609	54	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Testis
52919	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF	B_cell, Testis
750220	72	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
749768	36	ATG ...	MRW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	B_cell
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Testis
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Testis
53753	60	CTG ...	LKL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Testis
53593	102	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	B_cell, Testis
52711	81	CTG ...	LLW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Testis

536576

ENSMUST00000130645

Mtfr1-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, Neutrophil
52919	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
536612	48	ATG ...	MES ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
52711	81	CTG ...	LLW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, Neutrophil
543827	48	GTG ...	VLN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
54609	54	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
52533	51	TTG ...	LTC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
53593	102	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Liver
1648481	33	TTG ...	LKM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
538365	78	GTG ...	VLE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
536575	33	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
538385	36	TTG ...	LLP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
540798	171	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
749768	36	ATG ...	MRW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
751751	48	TTG ...	LRM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
537349	42	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
53753	60	CTG ...	LKL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
750723	54	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
53093	54	CTG ...	LQV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver
536595	177	ATG ...	MRM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
750220	72	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
752094	75	CTG ...	LER ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

893024

ENSMUST00000117529

Mtfr1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
893023	57	AAG ...	KLL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Liver
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver

503157

ENSMUST00000029129

Mtfr1-201

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
507171	96	TTG ...	LAT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, Spleen_B_cell, v6-5
506039	174	TTG ...	LVL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Spleen_B_cell, v6-5
52711	81	CTG ...	LLW ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, NSC, Spleen_B_cell, v6-5
1375467	36	TTG ...	LQG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1173513	39	CTG ...	LTC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
538365	78	GTG ...	VLE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
54225	93	ATG ...	MDH ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1374256	111	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
53593	102	GTG ...	VCS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
503968	141	CTG ...	LIK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Spleen_B_cell, v6-5
52026	84	GTG ...	VLL ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1374862	105	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
816683	45	TTG ...	LVA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
52191	78	ATG ...	MCC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
52375	72	ATG ...	MPE ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
54818	36	GTG ...	VLY ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	NMD sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
506293	111	TTG ...	LHC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
52919	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
816750	69	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
53093	54	CTG ...	LQV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
752094	75	CTG ...	LER ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
52533	51	TTG ...	LTC ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
54609	54	TTG ...	LLT ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
53753	60	CTG ...	LKL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
505304	114	TTG ...	LPF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, NSC, Spleen_B_cell, v6-5
506771	141	TTG ...	LFI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, Spleen_B_cell

ORFs

41 ORFs
8 known transcripts
108 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

750220

ATG...

MQQ...

ATG

Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, B_cell, 3T3,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

53593

102

GTG...

VCS...

GTG

Alternative
Overlapping
sORF
Upstream
NMD

Brain, Liver, 3T3,
E14, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5,
R1E, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq		2	sORFs_org_Mouse

537349

ATG...

MSL...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1171348	ENSMUST00000131053	Mtfr1-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

536595

177

ATG...

MRM...

ATG

sORF
Alternative
Downstream
NMD
InCDS
Overlapping

Glioma, Liver,
MEF, MESC, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3065293	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq	weak	1	Johnstone2016
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1374862

105

TTG...

LLR...

TTG

InCDS
Overlapping
sORF
Downstream
NMD

Liver, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1218408

129

ATG...

MVW...

ATG

sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

538385

TTG...

LLP...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1171348	ENSMUST00000131053	Mtfr1-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

54818

GTG...

VLY...

GTG

sORF
Upstream
NMD

B_cell, Testis, Brain,
3T3, Liver, MEF,
R1E, E14, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse
893024	ENSMUST00000117529	Mtfr1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

52191

ATG...

MCC...

ATG

Alternative
Overlapping
sORF
Upstream
NMD

3T3, Liver, Neutrophil,
B_cell, Testis, Glioma,
MEF, MESC, Brain,
E14, Spleen_B_cell, v6-5,
BMDC, C2C12, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse
893024	ENSMUST00000117529	Mtfr1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

893023

AAG...

KLL...

AAG

Alternative
Overlapping
sORF
Upstream

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893024	ENSMUST00000117529	Mtfr1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

52533

TTG...

LTC...

TTG

sORF
Alternative
Overlapping
Upstream
NMD

R1E, 3T3, Liver,
Brain, B_cell, Testis,
E14, MEF, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	weak	6	sORFs_org_Mouse

52711

CTG...

LLW...

CTG

Alternative
Overlapping
sORF
Upstream
NMD

Brain, Liver, 3T3,
Neutrophil, E14, MEF,
NSC, Spleen_B_cell, v6-5,
R1E, B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	7	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

52919

TTG...

LGR...

TTG

Alternative
Overlapping
sORF
Upstream
NMD

3T3, Liver, B_cell,
Testis, Brain, E14,
MEF, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	strong	4	sORFs_org_Mouse

507171

TTG...

LAT...

TTG

Alternative
Downstream
NMD
sORF

E14, MEF, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

536612

ATG...

MES...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

3T3, B_cell, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq	strong	1	Johnstone2016

53093

CTG...

LQV...

CTG

sORF
Alternative
Overlapping
Upstream
NMD

B_cell, Testis, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5,
R1E, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

54225

ATG...

MDH...

ATG

sORF
Alternative
NMD
Overlapping
Upstream

C2C12, E14, MEF,
R1E, Neutrophil,
NSC, Spleen_B_cell, v6-5,
3T3, Liver, B_cell,
Testis, Glioma, MESC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
3065293	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	8	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

543827

GTG...

VLN...

GTG

Alternative
InCDS
Overlapping
sORF

3T3, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

506039

174

TTG...

LVL...

TTG

Alternative
Downstream
NMD
sORF

E14, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

54609

TTG...

LLT...

TTG

Alternative
Overlapping
sORF
Upstream
NMD

3T3, Liver, Brain,
E14, MEF, R1E,
B_cell, Testis, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	6	sORFs_org_Mouse

1375467

TTG...

LQG...

TTG

Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1173513

CTG...

LTC...

CTG

Alternative
Downstream
NMD
sORF

MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

52375

ATG...

MPE...

ATG

sORF
Alternative
NMD
Overlapping
Upstream

B_cell, Testis, E14,
MEF, R1E, Neutrophil,
NSC, Spleen_B_cell, v6-5,
Brain, Liver, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	weak	7	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
893024	ENSMUST00000117529	Mtfr1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

536575

CTG...

LPL...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1171348	ENSMUST00000131053	Mtfr1-206	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

538365

GTG...

VLE...

GTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

MEF, 3T3, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

816750

GTG...

VAS...

GTG

Alternative
Downstream
NMD
sORF

B_cell, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1648481

TTG...

LKM...

TTG

Alternative
Downstream
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1374256

111

CTG...

LKK...

CTG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

503968

141

CTG...

LIK...

CTG

Alternative
Downstream
NMD
sORF

E14, Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

816683

TTG...

LVA...

TTG

Alternative
Downstream
NMD
sORF

B_cell, MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
816684	ENSMUST00000138777	Mtfr1-208	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

52026

GTG...

VLL...

GTG

Alternative
NMD
Overlapping
sORF
Upstream

E14, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5,
R1E, 3T3, Liver,
B_cell, Testis, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	weak	8	sORFs_org_Mouse
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
893024	ENSMUST00000117529	Mtfr1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

53753

CTG...

LKL...

CTG

sORF
Alternative
Overlapping
Upstream
NMD

MEF, R1E, 3T3,
Liver, Brain, B_cell,
Testis, E14, Neutrophil,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
413112	ENSMUST00000130806	Mtfr1-205	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
126976	ENSMUST00000119865	Mtfr1-203	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	weak	7	sORFs_org_Mouse

540798

171

ATG...

MTL...

ATG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

820288

CTG...

LEN...

CTG

sORF

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

749768

ATG...

MRW...

ATG

InCDS
Overlapping
sORF

3T3, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
52027	ENSMUST00000132035	Mtfr1-207	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

506293

111

TTG...

LHC...

TTG

Alternative
NMD
Overlapping
sORF
Upstream

E14, MEF, Neutrophil,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse

751751

TTG...

LRM...

TTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

752094

CTG...

LER...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

MEF, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

750723

CTG...

LPL...

CTG

Alternative
InCDS
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536576	ENSMUST00000130645	Mtfr1-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

505304

114

TTG...

LPF...

TTG

Alternative
NMD
Overlapping
sORF
Upstream

MEF, NSC, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse

506771

141

TTG...

LFI...

TTG

Alternative
NMD
Overlapping
sORF
Upstream

MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
503157	ENSMUST00000029129	Mtfr1-201	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

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