Transcript 5520 | MetamORF

Transcript

ID CARD

MetamORF ID

5520

ENSMUST00000140861

Name

Msmo1-204

Strand

Biotype

processed_transcript

Start-end positions

64718624-64721931

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:66234

Aliases

1500001G16Rik,
C78600, DESP4, ENSMUSG00000031604,
ERG25, MGI:1913484, Msmo1,
NCBI:66234, OFF:Msmo1, Sc4mol

Chr 8

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
82753	267	TTG ...	LCD ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Spleen_B_cell, Testis
5530	48	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
82676	234	GTG ...	VTI ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, Spleen_B_cell, Testis
81772	75	TTG ...	LCD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
82733	273	GTG ...	VLL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, Spleen_B_cell
82383	246	CTG ...	LWA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
78868	30	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
78735	81	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
5519	123	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Skin_tumor
5603	114	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Skin_tumor
79275	171	CTG ...	LNL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
236068	42	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
78491	165	TTG ...	LVP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
80825	54	CTG ...	LWA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
82482	222	TTG ...	LLE ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell, Testis
82068	42	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
242415	60	TTG ...	LCF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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