Transcript 364037

Transcript

ID CARD

MetamORF ID

364037

ENSMUST00000190810

Name

Ly6e-212

Strand

Biotype

protein_coding

Start-end positions

74955178-74958655

CDS Start-stop positions

74957808-

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:17069

Aliases

ENSMUSG00000022587,
Ly67, Ly6e, MGI:106651,
NCBI:17069, OFF:Ly6e, RIG-E,
Sca-2, TSA-1, Tsa1

Chr 15

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11762	36	CTG ...	LYH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	Brain, E14, MEF, v6-5
12041	156	ATG ...	MYR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
11922	165	GTG ...	VLL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
11583	69	GTG ...	VAS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
473467	75	GTG ...	VHS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
363551	63	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	MEF, Neutrophil
361340	111	TTG ...	LAC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
30662	39	GTG ...	VKM ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
31963	39	TTG ...	LRT ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, v6-5
362666	60	GTG ...	VIL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	MEF, Neutrophil
361853	84	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, Neutrophil
11998	111	ATG ...	MPG ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
33037	123	GTG ...	VAS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
12086	90	CTG ...	LYH ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
11406	57	ATG ...	MPG ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
11858	111	GTG ...	VLL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
11525	102	ATG ...	MYR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
33090	129	CTG ...	LPV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5
473560	99	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
1044676	120	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Neutrophil
31855	33	ATG ...	MSI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil
11404	75	CTG ...	LPV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, v6-5

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