Transcript 312574

Transcript

ID CARD

MetamORF ID

312574

ENSMUST00000127964

Name

Hnrnph1-206

Strand

Biotype

processed_transcript

Start-end positions

50377765-50382606

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:59013

Aliases

AI642080,
E430005G16Rik, ENSMUSG00000007850, Hnrnph,
Hnrnph1, Hnrph1, MGI:1891925,
NCBI:59013, OFF:Hnrnph1

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305504	33	TTG ...	LNQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
772191	165	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1037205	246	TTG ...	LEI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
307480	39	TTG ...	LNL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
317658	288	GTG ...	VVK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, NSC
312573	270	TTG ...	LPW ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, NSC
312374	54	GTG ...	VAR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
1124065	33	TTG ...	LKG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
890855	36	TTG ...	LLN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
22161	87	TTG ...	LYG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
652010	120	GTG ...	VLK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, NSC, v6-5
452890	63	TTG ...	LDV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
643223	117	TTG ...	LKH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
298254	33	ATG ...	MKC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF, v6-5
19899	108	CTG ...	LTQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
769119	141	CTG ...	LTP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC
996164	243	GTG ...	VQR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil
21593	102	ATG ...	MGL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
1484399	138	ATG ...	MHF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
91123	123	CTG ...	LVQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
311699	42	TTG ...	LLN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
1123234	42	TTG ...	LFS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	NSC, v6-5
996442	285	GTG ...	VKV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, NSC
21637	96	ATG ...	MMA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
293767	132	TTG ...	LFS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
8320	93	ATG ...	MAL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5

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