Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:59013

Aliases

AI642080
E430005G16Rik, ENSMUSG00000007850, Hnrnph
Hnrnph1, Hnrph1, MGI:1891925
NCBI:59013, OFF:Hnrnph1

Chromosome

11

Transcripts

120 ORFs
15 known transcripts
352 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

294429 51

CTG ...

LAE ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
307480 39

TTG ...

LNL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
294038 66

ATG ...

MII ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
312674 111

GTG ...

VAL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14
319705 132

CTG ...

LTT ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Spleen_B_cell
306029 66

ATG ...

MTD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
316312 120

ATG ...

MGT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Spleen_B_cell
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
312374 54

GTG ...

VAR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
305504 33

TTG ...

LNQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
21593 102

ATG ...

MGL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
304545 48

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
657048 78

GTG ...

VYT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
452890 63

TTG ...

LDV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
311870 78

ATG ...

MEA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
300110 69

ATG ...

MMI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
311699 42

TTG ...

LLN ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Spleen_B_cell
447804 30

TTG ...

LAE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
307213 111

ATG ...

MTH ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
301715 57

CTG ...

LGL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1295710 153

ATT ...

IIV ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1295798 51

AAG ...

KFY ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
E14
8074 153

TTG ...

LKY ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
19716 129

CTG ...

LKL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
297044 57

ATG ...

MAI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1294485 45

CTG ...

LRM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
8378 30

TTG ...

LGV ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
298197 81

CTG ...

LQN ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1293659 39

AGG ...

RWL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

22351 213

GTG ...

VQR ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
NSC, R1E
22572 258

GTG ...

VVK ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Brain, MEF,
Neutrophil, NSC
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil
298254 33

ATG ...

MKC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
22521 255

GTG ...

VKV ...

Ribo-seq
GTG

13 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, R1E, Spleen_B_cell,
v6-5
1576131 252

AAG ...

KVR ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
293767 132

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
312374 54

GTG ...

VAR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
8378 30

TTG ...

LGV ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
22415 240

TTG ...

LPW ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E
21593 102

ATG ...

MGL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
305504 33

TTG ...

LNQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
22404 285

CTG ...

LGA ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, Brain,
MEF, Neutrophil, NSC,
v6-5
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

18221 39

GTG ...

VVM ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
312374 54

GTG ...

VAR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
9323 201

TTG ...

LAL ...

Ribo-seq
TTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, Brain,
MEF, NSC, Skin_tumor,
Spleen_B_cell, Testis, v6-5
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
298254 33

ATG ...

MKC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
307213 111

ATG ...

MTH ...

Ribo-seq
ATG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, NSC
19865 33

ATG ...

MEV ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
304545 48

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
18495 69

GTG ...

VYT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
301715 57

CTG ...

LGL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
294038 66

ATG ...

MII ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
9170 195

TTG ...

LKK ...

Ribo-seq
TTG

8 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
Spleen_B_cell
8378 30

TTG ...

LGV ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
8074 153

TTG ...

LKY ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, NSC
18808 102

GTG ...

VAL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
294429 51

CTG ...

LAE ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
419685 138

ACG ...

TPR ...

Ribo-seq
ACG

2 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, C2C12
308588 174

TTG ...

LDN ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
307410 207

ATG ...

MFS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, NSC
297044 57

ATG ...

MAI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
90865 129

GTG ...

VRV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
17843 111

ATG ...

MGT ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
774317 129

GTG ...

VLL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
769119 141

CTG ...

LTP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
293415 63

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
306029 66

ATG ...

MTD ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, NSC
772191 165

ATG ...

MPV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
21052 39

CTG ...

LCT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
298197 81

CTG ...

LQN ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
292338 39

ATG ...

MDL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
774724 87

TTG ...

LAL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
293767 132

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
17559 123

CTG ...

LTT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
1294586 270

ATC ...

IYT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1293910 132

AGG ...

RLF ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
773547 81

TTG ...

LNS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
774678 126

TTG ...

LLP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
296254 33

TTG ...

LVQ ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
311699 42

TTG ...

LLN ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
447804 30

TTG ...

LAE ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
446809 60

TTG ...

LQT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
19716 129

CTG ...

LKL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, MEF
300110 69

ATG ...

MMI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
305504 33

TTG ...

LNQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
307480 39

TTG ...

LNL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
297997 45

ATG ...

MAM ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
311870 78

ATG ...

MEA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
21593 102

ATG ...

MGL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
769173 81

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
20110 42

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
B_cell
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

293415 63

CTG ...

LSG ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver
1294527 42

AGG ...

RWL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
311870 78

ATG ...

MEA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
1484399 138

ATG ...

MHF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
447804 30

TTG ...

LAE ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
1530256 156

GTG ...

VCD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
9323 201

TTG ...

LAL ...

Ribo-seq
TTG

9 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Brain, E14,
Liver, MEF, Neutrophil,
R1E
90865 129

GTG ...

VRV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
769119 141

CTG ...

LTP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
294429 51

CTG ...

LAE ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
312374 54

GTG ...

VAR ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
769173 81

TTG ...

LKK ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
307213 111

ATG ...

MTH ...

Ribo-seq
ATG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
19865 33

ATG ...

MEV ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1288387 39

ATT ...

ISP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
307410 207

ATG ...

MFS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
20110 42

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
21052 39

CTG ...

LCT ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
307480 39

TTG ...

LNL ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
8074 153

TTG ...

LKY ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
774678 126

TTG ...

LLP ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1037205 246

TTG ...

LEI ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
297044 57

ATG ...

MAI ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
292338 39

ATG ...

MDL ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
9170 195

TTG ...

LKK ...

Ribo-seq
TTG

12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Skin_tumor, Testis,
v6-5
300110 69

ATG ...

MMI ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
772191 165

ATG ...

MPV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
298254 33

ATG ...

MKC ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
446378 30

GTG ...

VIF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
301715 57

CTG ...

LGL ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
452890 63

TTG ...

LDV ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
311699 42

TTG ...

LLN ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
19716 129

CTG ...

LKL ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
1528861 66

TTG ...

LTN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
17843 111

ATG ...

MGT ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
294038 66

ATG ...

MII ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
297997 45

ATG ...

MAM ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
17559 123

CTG ...

LTT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
446809 60

TTG ...

LQT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
304545 48

ATG ...

MMA ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
296254 33

TTG ...

LVQ ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
308588 174

TTG ...

LDN ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
306029 66

ATG ...

MTD ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
18495 69

GTG ...

VYT ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
24092 174

CTG ...

LSG ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
298197 81

CTG ...

LQN ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
305504 33

TTG ...

LNQ ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
8378 30

TTG ...

LGV ...

Ribo-seq
TTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
293767 132

TTG ...

LFS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
18221 39

GTG ...

VVM ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
21593 102

ATG ...

MGL ...

Ribo-seq
ATG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1528415 96

TTG ...

LNS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
773547 81

TTG ...

LNS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
774724 87

TTG ...

LAL ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1528064 135

GTG ...

VCV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
18808 102

GTG ...

VAL ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
774317 129

GTG ...

VLL ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1528115 237

GTG ...

VPN ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1285947 198

AGG ...

RST ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1285118 33

AGG ...

RPS ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1285910 51

AGG ...

RGG ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
308588 174

TTG ...

LDN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1285923 192

ACG ...

TGE ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1286151 219

TTG ...

LPV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
318711 270

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
320245 267

TTG ...

LKH ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
1123234 42

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
452890 63

TTG ...

LDV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1290629 213

GTG ...

VDF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

22404 285

CTG ...

LGA ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, Liver,
R1E, Spleen_B_cell, Testis
307410 207

ATG ...

MFS ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
v6-5
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
22521 255

GTG ...

VKV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Neutrophil, Testis
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
294038 66

ATG ...

MII ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
21052 39

CTG ...

LCT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
22736 105

CTG ...

LSG ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
8074 153

TTG ...

LKY ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil, v6-5
294429 51

CTG ...

LAE ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil, v6-5
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
22572 258

GTG ...

VVK ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, Liver,
R1E, Spleen_B_cell, Testis,
v6-5
297044 57

ATG ...

MAI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
22351 213

GTG ...

VQR ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Testis,
v6-5
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF
17559 123

CTG ...

LTT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
300110 69

ATG ...

MMI ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, v6-5
304545 48

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
293767 132

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
311870 78

ATG ...

MEA ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil, v6-5
308588 174

TTG ...

LDN ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, E14, MEF,
NSC, v6-5
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF
19716 129

CTG ...

LKL ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil, NSC,
v6-5
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF
293415 63

CTG ...

LSG ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil, v6-5
306029 66

ATG ...

MTD ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
301715 57

CTG ...

LGL ...

Ribo-seq
CTG

strong

2 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil, v6-5
307213 111

ATG ...

MTH ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
298197 81

CTG ...

LQN ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
22415 240

TTG ...

LPW ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, Brain, E14,
Spleen_B_cell, Testis, v6-5
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

17843 111

ATG ...

MGT ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
20110 42

GTG ...

VVV ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Testis
8378 30

TTG ...

LGV ...

Ribo-seq
TTG

strong

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Skin_tumor
18808 102

GTG ...

VAL ...

Ribo-seq
GTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, R1E
21052 39

CTG ...

LCT ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
305504 33

TTG ...

LNQ ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
294038 66

ATG ...

MII ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Testis
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Brain, R1E, Testis
1123234 42

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Testis
297044 57

ATG ...

MAI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, Testis
312674 111

GTG ...

VAL ...

Ribo-seq
GTG

12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
R1E, v6-5
1039157 276

TTG ...

LLP ...

Ribo-seq
TTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, v6-5
300110 69

ATG ...

MMI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1038529 285

GTG ...

VCV ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, v6-5
319705 132

CTG ...

LTT ...

Ribo-seq
CTG

12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
R1E, v6-5
19865 33

ATG ...

MEV ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Testis
306029 66

ATG ...

MTD ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E
8074 153

TTG ...

LKY ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Skin_tumor, Testis
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Testis
311699 42

TTG ...

LLN ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
19716 129

CTG ...

LKL ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, Testis
21593 102

ATG ...

MGL ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
C2C12, R1E, Testis
452890 63

TTG ...

LDV ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
311870 78

ATG ...

MEA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1294485 45

CTG ...

LRM ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
18221 39

GTG ...

VVM ...

Ribo-seq
GTG

strong

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Testis
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Skin_tumor
657048 78

GTG ...

VYT ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, R1E, v6-5
312374 54

GTG ...

VAR ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
307213 111

ATG ...

MTH ...

Ribo-seq
ATG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1038927 279

GTG ...

VLL ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, v6-5
307480 39

TTG ...

LNL ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E
17559 123

CTG ...

LTT ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
316312 120

ATG ...

MGT ...

Ribo-seq
ATG

12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
R1E, v6-5
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

319705 132

CTG ...

LTT ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
931885 93

AAG ...

KVF ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
936172 114

ATA ...

IVL ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
19716 129

CTG ...

LKL ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
932767 141

ATT ...

IVF ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Liver
297044 57

ATG ...

MAI ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
311870 78

ATG ...

MEA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
19865 33

ATG ...

MEV ...

Ribo-seq
ATG

strong

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
307213 111

ATG ...

MTH ...

Ribo-seq
ATG

moderate

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
294038 66

ATG ...

MII ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
936884 150

ATT ...

IVF ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
301715 57

CTG ...

LGL ...

Ribo-seq
CTG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

305504 33

TTG ...

LNQ ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
772191 165

ATG ...

MPV ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1037205 246

TTG ...

LEI ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Neutrophil
307480 39

TTG ...

LNL ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
317658 288

GTG ...

VVK ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Neutrophil,
NSC
312573 270

TTG ...

LPW ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Neutrophil,
NSC
312374 54

GTG ...

VAR ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
1124065 33

TTG ...

LKG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
v6-5
890855 36

TTG ...

LLN ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF,
NSC, v6-5
452890 63

TTG ...

LDV ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, NSC,
v6-5
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
298254 33

ATG ...

MKC ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
MEF, v6-5
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
769119 141

CTG ...

LTP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, NSC
996164 243

GTG ...

VQR ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Neutrophil
21593 102

ATG ...

MGL ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
1484399 138

ATG ...

MHF ...

Ribo-seq
ATG

2 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
311699 42

TTG ...

LLN ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
1123234 42

TTG ...

LFS ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
NSC, v6-5
996442 285

GTG ...

VKV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    ncRNA
    sORF
Brain, Liver, Neutrophil,
NSC
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
293767 132

TTG ...

LFS ...

Ribo-seq
TTG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, v6-5
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

446809 60

TTG ...

LQT ...

Ribo-seq
TTG

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, NSC
20110 42

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
446378 30

GTG ...

VIF ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, NSC
1289511 51

AAG ...

KFY ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1292992 42

AGG ...

RWL ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
18221 39

GTG ...

VVM ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, Spleen_B_cell
22736 105

CTG ...

LSG ...

Ribo-seq
CTG

7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF,
NSC, R1E, Spleen_B_cell,
v6-5
19865 33

ATG ...

MEV ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, Spleen_B_cell
293415 63

CTG ...

LSG ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
NSC
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

18495 69

GTG ...

VYT ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, Testis, v6-5
90865 129

GTG ...

VRV ...

Ribo-seq
GTG

5 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil, NSC,
Testis
1288156 57

ATA ...

ICR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1293546 216

ATT ...

IGP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
22645 234

GTG ...

VRV ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, Testis
932280 57

ATA ...

ICR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
BMDC
1286141 30

ATA ...

ILR ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1286765 111

ATT ...

IGP ...

Ribo-seq
ATT

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
21052 39

CTG ...

LCT ...

Ribo-seq
CTG

moderate

8 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, NSC,
Spleen_B_cell, Testis, v6-5
1292006 81

ATA ...

IWG ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
18808 102

GTG ...

VAL ...

Ribo-seq
GTG

9 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis,
v6-5
17559 123

CTG ...

LTT ...

Ribo-seq
CTG

10 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
17843 111

ATG ...

MGT ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis,
v6-5
773547 81

TTG ...

LNS ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

446809 60

TTG ...

LQT ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
1293833 147

ATA ...

ICR ...

Ribo-seq
ATA

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
293415 63

CTG ...

LSG ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
22736 105

CTG ...

LSG ...

Ribo-seq
CTG

6 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Brain, MEF,
Neutrophil, Testis
20110 42

GTG ...

VVV ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
446378 30

GTG ...

VIF ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Spleen_B_cell
776816 ENSMUST00000132715 Hnrnph1-209 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

22645 234

GTG ...

VRV ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    ncRNA
    sORF
B_cell, Brain
90865 129

GTG ...

VRV ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
Brain
644115 ENSMUST00000133435 Hnrnph1-210 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
19540 108

CTG ...

LCG ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain
311699 42

TTG ...

LLN ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
Liver
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
3T3
3221678 UNKNOWN_TRANSCRIPT
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

307213 111

ATG ...

MTH ...

Predicted
ATG

1 Samandi2017
    sORF
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

9580 213

TTG ...

LKK ...

Ribo-seq
TTG

19 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
1484399 138

ATG ...

MHF ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1530256 156

GTG ...

VCD ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
22161 87

TTG ...

LYG ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
643223 117

TTG ...

LKH ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
19899 108

CTG ...

LTQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
1296034 288

ATC ...

IYT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    ncRNA
    sORF
E14
91123 123

CTG ...

LVQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
293767 132

TTG ...

LFS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
21637 96

ATG ...

MMA ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
652010 120

GTG ...

VLK ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
293936 33

GTG ...

VWT ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
298254 33

ATG ...

MKC ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF
9568 219

TTG ...

LAL ...

Ribo-seq
TTG

18 sORFs_org_Mouse
    ncRNA
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
8320 93

ATG ...

MAL ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    ncRNA
    sORF
MEF

ORFs

120 ORFs
15 known transcripts
352 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

294429 51

CTG...

LAE...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, 3T3, Brain,
Neutrophil, v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
22351 213

GTG...

VQR...

GTG ncRNA
sORF
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
NSC, R1E, Liver,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
9 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
4 sORFs_org_Mouse
18221 39

GTG...

VVM...

GTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, 3T3, E14,
Spleen_B_cell, BMDC, Testis,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
293415 63

CTG...

LSG...

CTG ncRNA
sORF
Brain, Liver, B_cell,
Spleen_B_cell, 3T3, E14,
NSC, MEF, Neutrophil,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript Ribo-seq
1 sORFs_org_Mouse
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
4 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
4 sORFs_org_Mouse
1285947 198

AGG...

RST...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22404 285

CTG...

LGA...

CTG ncRNA
sORF
BMDC, E14, Liver,
R1E, Spleen_B_cell, Testis,
3T3, B_cell, Brain,
MEF, Neutrophil, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
6 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
10 sORFs_org_Mouse
17843 111

ATG...

MGT...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, R1E, B_cell,
3T3, Brain, E14,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
8 sORFs_org_Mouse
312374 54

GTG...

VAR...

GTG ncRNA
sORF
InCDS
Overlapping
B_cell, Brain, Neutrophil,
Spleen_B_cell, 3T3, E14,
MEF, NSC, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
319705 132

CTG...

LTT...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, 3T3, B_cell,
E14, Spleen_B_cell, Brain,
MEF, Neutrophil, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
4 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
12 sORFs_org_Mouse
307480 39

TTG...

LNL...

TTG InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, 3T3, E14,
MEF, NSC, v6-5,
Brain, R1E, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1294527 42

AGG...

RWL...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9323 201

TTG...

LAL...

TTG ncRNA
sORF
3T3, BMDC, Brain,
MEF, NSC, Skin_tumor,
Spleen_B_cell, Testis, v6-5,
B_cell, E14, Liver,
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
10 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
9 sORFs_org_Mouse
305504 33

TTG...

LNQ...

TTG ncRNA
sORF
InCDS
Overlapping
MEF, NSC, R1E,
Spleen_B_cell, Neutrophil, Brain,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
311870 78

ATG...

MEA...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
3T3, Brain, Spleen_B_cell,
BMDC, R1E, MEF,
Neutrophil, v6-5, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
4 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
293936 33

GTG...

VWT...

GTG Alternative
Overlapping
sORF
Upstream
ncRNA
Spleen_B_cell, 3T3, Brain,
R1E, Liver, Neutrophil,
MEF, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
644115 ENSMUST00000133435 Hnrnph1-210 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1484399 138

ATG...

MHF...

ATG ncRNA
sORF
Brain, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
22161 87

TTG...

LYG...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, B_cell, Spleen_B_cell,
MEF, R1E, Testis,
3T3, E14, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
294038 66

ATG...

MII...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, MEF, v6-5,
B_cell, R1E, 3T3,
Brain, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
307410 207

ATG...

MFS...

ATG ncRNA
sORF
E14, MEF, Neutrophil,
v6-5, Brain, B_cell,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
4 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
19899 108

CTG...

LTQ...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
Brain, Neutrophil, B_cell,
MEF, Spleen_B_cell, 3T3,
E14, NSC, v6-5,
R1E, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
22572 258

GTG...

VVK...

GTG ncRNA
sORF
B_cell, Brain, MEF,
Neutrophil, NSC, BMDC,
E14, Liver, R1E,
Spleen_B_cell, Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
9 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
7 sORFs_org_Mouse
772191 165

ATG...

MPV...

ATG ncRNA
sORF
MEF, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
447804 30

TTG...

LAE...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
3T3, Brain, Spleen_B_cell,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
1530256 156

GTG...

VCD...

GTG ncRNA
sORF
Brain, MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
446809 60

TTG...

LQT...

TTG ncRNA
sORF
3T3, NSC, Spleen_B_cell,
Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
2 sORFs_org_Mouse
22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
298254 33

ATG...

MKC...

ATG ncRNA
sORF
B_cell, Neutrophil, Brain,
3T3, BMDC, E14,
MEF, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
5 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
21637 96

ATG...

MMA...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, E14, R1E,
Testis, Spleen_B_cell, Brain,
3T3, NSC, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
307213 111

ATG...

MTH...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, NSC, 3T3,
Brain, Spleen_B_cell,
R1E, Glioma, Liver,
MEF, MESC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
3221678 UNKNOWN_TRANSCRIPT Predicted
1 Samandi2017
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
moderate 1 Johnstone2016
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
312674 111

GTG...

VAL...

GTG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, E14,
BMDC, Brain, MEF,
Neutrophil, NSC, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
12 sORFs_org_Mouse
90865 129

GTG...

VRV...

GTG ncRNA
sORF
Brain, MEF, Neutrophil,
NSC, Testis, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
5 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
776816 ENSMUST00000132715 Hnrnph1-209 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22521 255

GTG...

VKV...

GTG ncRNA
sORF
BMDC, Neutrophil, Testis,
3T3, Brain, E14,
Liver, MEF, NSC,
R1E, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
3 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
13 sORFs_org_Mouse
769119 141

CTG...

LTP...

CTG ncRNA
sORF
Brain, B_cell, E14,
MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
4 sORFs_org_Mouse
20110 42

GTG...

VVV...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
BMDC, Testis, Brain,
3T3, Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
18495 69

GTG...

VYT...

GTG ncRNA
sORF
E14, MEF, Neutrophil,
NSC, Testis, v6-5,
B_cell, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
7 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
19540 108

CTG...

LCG...

CTG ncRNA
sORF
Alternative
Overlapping
Upstream
MEF, Neutrophil, Brain,
R1E, Testis, 3T3,
BMDC, Liver, Spleen_B_cell,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
644115 ENSMUST00000133435 Hnrnph1-210 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
1037205 246

TTG...

LEI...

TTG ncRNA
sORF
Neutrophil, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
1285118 33

AGG...

RPS...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
8320 93

ATG...

MAL...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, Spleen_B_cell, R1E,
Skin_tumor, Brain, 3T3,
E14, NSC, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
931885 93

AAG...

KVF...

AAG InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
19865 33

ATG...

MEV...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, Brain, BMDC,
MEF, Testis, Glioma,
Liver, MESC, 3T3,
E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
strong 1 Johnstone2016
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
304545 48

ATG...

MMA...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, Spleen_B_cell, MEF,
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
769173 81

TTG...

LKK...

TTG ncRNA
sORF
Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22645 234

GTG...

VRV...

GTG ncRNA
sORF
B_cell, Brain, E14,
MEF, Neutrophil, NSC,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

776816 ENSMUST00000132715 Hnrnph1-209 processed_transcript Ribo-seq
3 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
6 sORFs_org_Mouse
8378 30

TTG...

LGV...

TTG InCDS
Overlapping
sORF
ncRNA
Brain, Skin_tumor, Neutrophil,
B_cell, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
strong 2 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
936172 114

ATA...

IVL...

ATA Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
21052 39

CTG...

LCT...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, R1E, 3T3,
Brain, B_cell, E14,
NSC, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
moderate 8 sORFs_org_Mouse
1576131 252

AAG...

KVR...

AAG ncRNA
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
1 sORFs_org_Mouse
293767 132

TTG...

LFS...

TTG ncRNA
sORF
Neutrophil, MEF, B_cell,
Brain, 3T3, E14,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
2 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
317658 288

GTG...

VVK...

GTG ncRNA
sORF
Brain, Liver, Neutrophil,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
18808 102

GTG...

VAL...

GTG Alternative
InCDS
Overlapping
sORF
ncRNA
MEF, R1E, B_cell,
E14, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5,
3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
9 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1288387 39

ATT...

ISP...

ATT ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
301715 57

CTG...

LGL...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, 3T3, Brain,
Spleen_B_cell, Neutrophil, v6-5,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 3 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
1285910 51

AGG...

RGG...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
306029 66

ATG...

MTD...

ATG Alternative
InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, Brain, R1E,
B_cell, NSC, 3T3,
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
22736 105

CTG...

LSG...

CTG ncRNA
sORF
3T3, Brain, BMDC,
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5,
B_cell, Neutrophil, Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
7 sORFs_org_Mouse
22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript Ribo-seq
6 sORFs_org_Mouse
312573 270

TTG...

LPW...

TTG ncRNA
sORF
Brain, Liver, Neutrophil,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
8074 153

TTG...

LKY...

TTG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, Neutrophil, v6-5,
3T3, Brain, B_cell,
NSC, R1E, Skin_tumor,
Testis, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
316312 120

ATG...

MGT...

ATG Alternative
InCDS
Overlapping
sORF
3T3, B_cell, Spleen_B_cell,
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
R1E, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
3 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
12 sORFs_org_Mouse
9170 195

TTG...

LKK...

TTG ncRNA
sORF
B_cell, BMDC, Brain,
E14, MEF, NSC,
Spleen_B_cell, 3T3, Liver,
Neutrophil, R1E, Skin_tumor,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
8 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
12 sORFs_org_Mouse
1293833 147

ATA...

ICR...

ATA ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript Ribo-seq
1 sORFs_org_Mouse
19716 129

CTG...

LKL...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
BMDC, 3T3, Brain,
R1E, Testis, MEF,
Neutrophil, NSC, v6-5,
Spleen_B_cell, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
moderate 4 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 2 sORFs_org_Mouse
774678 126

TTG...

LLP...

TTG ncRNA
sORF
Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
652010 120

GTG...

VLK...

GTG ncRNA
sORF
B_cell, Neutrophil, E14,
BMDC, MEF, NSC,
v6-5, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
644115 ENSMUST00000133435 Hnrnph1-210 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
21593 102

ATG...

MGL...

ATG InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, Neutrophil, C2C12,
R1E, Testis, 3T3,
E14, MEF, NSC,
v6-5, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
strong 3 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
5 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
419685 138

ACG...

TPR...

ACG ncRNA
sORF
BMDC, C2C12
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
2 sORFs_org_Mouse
1123234 42

TTG...

LFS...

TTG Alternative
InCDS
Overlapping
sORF
ncRNA
R1E, E14, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
2 sORFs_org_Mouse
297044 57

ATG...

MAI...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
3T3, Brain, R1E,
BMDC, B_cell, MEF,
v6-5, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
292338 39

ATG...

MDL...

ATG ncRNA
sORF
3T3, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
300110 69

ATG...

MMI...

ATG ncRNA
sORF
Alternative
InCDS
Overlapping
3T3, Brain, R1E,
Spleen_B_cell, MEF, v6-5,
B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
643223 117

TTG...

LKH...

TTG ncRNA
sORF
Brain, MEF, 3T3,
E14, NSC, v6-5,
B_cell, BMDC, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
91123 123

CTG...

LVQ...

CTG Alternative
InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, Brain, R1E,
Testis, MEF, 3T3,
E14, NSC, v6-5,
B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
2 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
strong 1 sORFs_org_Mouse
657048 78

GTG...

VYT...

GTG Alternative
InCDS
Overlapping
sORF
3T3, Brain, E14,
MEF, NSC, R1E,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
6 sORFs_org_Mouse
932767 141

ATT...

IVF...

ATT Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1288156 57

ATA...

ICR...

ATA ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
452890 63

TTG...

LDV...

TTG Alternative
InCDS
Overlapping
sORF
ncRNA
Spleen_B_cell, Brain, E14,
MEF, NSC, v6-5,
R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
5 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
311699 42

TTG...

LLN...

TTG ncRNA
sORF
InCDS
Overlapping
Liver, Spleen_B_cell, Brain,
R1E, B_cell, 3T3,
E14, MEF, NSC,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

644115 ENSMUST00000133435 Hnrnph1-210 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
6 sORFs_org_Mouse
446378 30

GTG...

VIF...

GTG ncRNA
sORF
Brain, 3T3, E14,
NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
3 sORFs_org_Mouse
22737 ENSMUST00000140056 Hnrnph1-212 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1039157 276

TTG...

LLP...

TTG Alternative
InCDS
Overlapping
sORF
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
9580 213

TTG...

LKK...

TTG ncRNA
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
19 sORFs_org_Mouse
308588 174

TTG...

LDN...

TTG ncRNA
sORF
B_cell, Neutrophil, 3T3,
Brain, E14, MEF,
NSC, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 3 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
5 sORFs_org_Mouse
1124065 33

TTG...

LKG...

TTG ncRNA
sORF
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1038529 285

GTG...

VCV...

GTG Alternative
InCDS
Overlapping
sORF
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1293546 216

ATT...

IGP...

ATT ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1289511 51

AAG...

KFY...

AAG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1292992 42

AGG...

RWL...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

450192 ENSMUST00000156642 Hnrnph1-218 processed_transcript Ribo-seq
1 sORFs_org_Mouse
890855 36

TTG...

LLN...

TTG ncRNA
sORF
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
1 sORFs_org_Mouse
774317 129

GTG...

VLL...

GTG ncRNA
sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
22415 240

TTG...

LPW...

TTG ncRNA
sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, BMDC,
E14, Spleen_B_cell, Testis,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

316020 ENSMUST00000128220 Hnrnph1-207 processed_transcript Ribo-seq
8 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
6 sORFs_org_Mouse
1528861 66

TTG...

LTN...

TTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1285923 192

ACG...

TGE...

ACG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
17559 123

CTG...

LTT...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
MEF, 3T3, Brain,
B_cell, BMDC, E14,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
10 sORFs_org_Mouse
8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
2 sORFs_org_Mouse
297997 45

ATG...

MAM...

ATG ncRNA
sORF
3T3, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1286151 219

TTG...

LPV...

TTG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
298197 81

CTG...

LQN...

CTG ncRNA
sORF
Alternative
InCDS
Overlapping
B_cell, Brain, Spleen_B_cell,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
weak 2 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
22352 ENSMUST00000134230 Hnrnph1-211 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
318711 270

GTG...

VLK...

GTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
774724 87

TTG...

LAL...

TTG ncRNA
sORF
B_cell, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1294586 270

ATC...

IYT...

ATC ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
932280 57

ATA...

ICR...

ATA ncRNA
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1286141 30

ATA...

ILR...

ATA ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1296034 288

ATC...

IYT...

ATC ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
1 sORFs_org_Mouse
296254 33

TTG...

LVQ...

TTG ncRNA
sORF
3T3, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
3 sORFs_org_Mouse
9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
996164 243

GTG...

VQR...

GTG ncRNA
sORF
Brain, Liver, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
3 sORFs_org_Mouse
1286765 111

ATT...

IGP...

ATT ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1294485 45

CTG...

LRM...

CTG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1293910 132

AGG...

RLF...

AGG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
24092 174

CTG...

LSG...

CTG ncRNA
sORF
3T3, Brain, E14,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
10 sORFs_org_Mouse
773547 81

TTG...

LNS...

TTG ncRNA
sORF
B_cell, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9324 ENSMUST00000123371 Hnrnph1-204 processed_transcript Ribo-seq
1 sORFs_org_Mouse
9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
320245 267

TTG...

LKH...

TTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse
1295710 153

ATT...

IIV...

ATT Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1038927 279

GTG...

VLL...

GTG Alternative
InCDS
Overlapping
sORF
MEF, Neutrophil, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

8075 ENSMUST00000069304 Hnrnph1-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1292006 81

ATA...

IWG...

ATA ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

17560 ENSMUST00000141668 Hnrnph1-213 processed_transcript Ribo-seq
weak 1 sORFs_org_Mouse
1295798 51

AAG...

KFY...

AAG Downstream
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1528415 96

TTG...

LNS...

TTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
936884 150

ATT...

IVF...

ATT Alternative
InCDS
Overlapping
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

930663 ENSMUST00000077817 Hnrnph1-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
1528064 135

GTG...

VCV...

GTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
1 sORFs_org_Mouse
996442 285

GTG...

VKV...

GTG ncRNA
sORF
Brain, Liver, Neutrophil,
NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

312574 ENSMUST00000127964 Hnrnph1-206 processed_transcript Ribo-seq
5 sORFs_org_Mouse
9568 219

TTG...

LAL...

TTG ncRNA
sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9569 ENSMUST00000129631 Hnrnph1-208 processed_transcript Ribo-seq
18 sORFs_org_Mouse
1293659 39

AGG...

RWL...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

446146 ENSMUST00000109142 Hnrnph1-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
1528115 237

GTG...

VPN...

GTG ncRNA
sORF
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

9171 ENSMUST00000126737 Hnrnph1-205 processed_transcript Ribo-seq
moderate 1 sORFs_org_Mouse
1290629 213

GTG...

VDF...

GTG ncRNA
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

318712 ENSMUST00000150153 Hnrnph1-215 processed_transcript Ribo-seq
1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5