Transcript 36349 | MetamORF

Transcript

ID CARD

MetamORF ID

36349

ENSMUST00000039487

Name

Gtf2h5-201

Strand

Biotype

protein_coding

Start-end positions

6079786-6086517

CDS Start-stop positions

6080840-6084652

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:66467

Aliases

2700017P07Rik,
2810432H05Rik, D17Wsu155e, ENSMUSG00000034345,
Gtf2h5, MGI:107227, NCBI:66467,
OFF:Gtf2h5

Chr 17

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38198	102	ATG ...	MRP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell, Testis
976241	135	AGG ...	RGT ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
38048	57	ATG ...	MTR ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
382470	63	GTG ...	VGF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
37721	60	TTG ...	LMT ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
36348	36	TTG ...	LPS ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
379424	45	ATG ...	MSM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, v6-5
386754	48	TTG ...	LLE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, Brain, Liver, MEF, R1E
382400	138	TTG ...	LVK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
380265	78	GTG ...	VSR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF, R1E
37928	39	CTG ...	LHR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, R1E, Testis
954613	96	ATT ...	ILE ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF
422156	42	AGG ...	RGA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
38320	30	CTG ...	LPG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, Testis
384483	72	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, R1E, v6-5
380280	99	ATG ...	MTY ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF
381844	39	ATG ...	MSW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
385047	39	TTG ...	LER ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, MEF, R1E
36718	69	CTG ...	LGK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Testis
381975	45	TTG ...	LEL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Liver, MEF, R1E
955910	84	ATC ...	ICT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC

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