Gene NCBI:66467 | MetamORF

Gene

ID CARD

NCBI:66467

Aliases

2700017P07Rik
2810432H05Rik, D17Wsu155e, ENSMUSG00000034345
Gtf2h5, MGI:107227, NCBI:66467
OFF:Gtf2h5

Chromosome

Transcripts

23 ORFs
3 known transcripts
44 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

36349

ENSMUST00000039487

Gtf2h5-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38198	102	ATG ...	MRP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell, Testis
976241	135	AGG ...	RGT ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
38048	57	ATG ...	MTR ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
382470	63	GTG ...	VGF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
37721	60	TTG ...	LMT ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
36348	36	TTG ...	LPS ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
379424	45	ATG ...	MSM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, v6-5
386754	48	TTG ...	LLE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, Brain, Liver, MEF, R1E
382400	138	TTG ...	LVK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
380265	78	GTG ...	VSR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF, R1E
37928	39	CTG ...	LHR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, R1E, Testis
954613	96	ATT ...	ILE ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF
422156	42	AGG ...	RGA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
38320	30	CTG ...	LPG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, Testis
384483	72	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, R1E, v6-5
380280	99	ATG ...	MTY ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF
381844	39	ATG ...	MSW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
385047	39	TTG ...	LER ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, Liver, MEF, R1E
36718	69	CTG ...	LGK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Testis
381975	45	TTG ...	LEL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Liver, MEF, R1E
955910	84	ATC ...	ICT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC

422157

ENSMUST00000146035

Gtf2h5-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38320	30	CTG ...	LPG ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Spleen_B_cell, v6-5
381975	45	TTG ...	LEL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, Spleen_B_cell
1628154	84	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
386754	48	TTG ...	LLE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, Spleen_B_cell
36718	69	CTG ...	LGK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, NSC, Spleen_B_cell
385047	39	TTG ...	LER ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, Spleen_B_cell
380265	78	GTG ...	VSR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
37928	39	CTG ...	LHR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
422156	42	AGG ...	RGA ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	C2C12

385569

ENSMUST00000100955

Gtf2h5-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38198	102	ATG ...	MRP ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, v6-5
37928	39	CTG ...	LHR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil
38320	30	CTG ...	LPG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil
382470	63	GTG ...	VGF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
379424	45	ATG ...	MSM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
381844	39	ATG ...	MSW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
422156	42	AGG ...	RGA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
954613	96	ATT ...	ILE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
384483	72	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, B_cell, Glioma, Liver, MEF, MESC
37721	60	TTG ...	LMT ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC
36718	69	CTG ...	LGK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF, Neutrophil
36348	36	TTG ...	LPS ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
1190421	99	AGG ...	RPT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
38048	57	ATG ...	MTR ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5

3013516

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38198	102	ATG ...	MRP ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

23 ORFs
3 known transcripts
44 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

38198

102

ATG...

MRP...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, MEF, R1E,
Spleen_B_cell, Testis, 3T3,
B_cell, BMDC, E14,
Glioma, Liver, MESC,
Neutrophil, NSC, v6-5,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	weak	14	sORFs_org_Mouse Johnstone2016
3013516	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

38320

CTG...

LPG...

CTG

Intronic
sORF
Alternative
Overlapping
Upstream

Brain, Liver, MEF,
Spleen_B_cell, v6-5, 3T3,
B_cell, Neutrophil, BMDC,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq	weak	6	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

976241

135

AGG...

RGT...

AGG

Alternative
Downstream
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

38048

ATG...

MTR...

ATG

Alternative
InCDS
Overlapping
sORF

BMDC, Brain, Liver,
MEF, R1E, Spleen_B_cell,
Testis, 3T3, B_cell,
E14, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	weak	12	sORFs_org_Mouse

382470

GTG...

VGF...

GTG

Alternative
Downstream
sORF

Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

37928

CTG...

LHR...

CTG

Alternative
Overlapping
sORF
Upstream
Intronic

3T3, B_cell, MEF,
Neutrophil, Brain, R1E,
Testis, E14, Liver,
Spleen_B_cell, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq	weak	7	sORFs_org_Mouse

37721

TTG...

LMT...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Liver, MEF,
R1E, Spleen_B_cell, Testis,
v6-5, 3T3, B_cell,
BMDC, E14, Neutrophil,
NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	moderate	10	sORFs_org_Mouse

36348

TTG...

LPS...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, Liver, MEF,
R1E, Spleen_B_cell, Testis,
3T3, B_cell, BMDC,
E14, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	weak	7	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	weak	12	sORFs_org_Mouse

381975

TTG...

LEL...

TTG

Intronic
sORF
Upstream

3T3, MEF, Neutrophil,
Spleen_B_cell, B_cell, Brain,
Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq		6	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1628154

CTG...

LVC...

CTG

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq		1	sORFs_org_Mouse

379424

ATG...

MSM...

ATG

Alternative
Downstream
sORF

Brain, v6-5, Glioma,
Liver, MEF, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	moderate	1	Johnstone2016

386754

TTG...

LLE...

TTG

sORF
Upstream
Intronic

B_cell, BMDC, Brain,
Liver, MEF, R1E,
3T3, Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq		6	sORFs_org_Mouse

381844

ATG...

MSW...

ATG

Alternative
Downstream
sORF

v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

422156

AGG...

RGA...

AGG

Alternative
InCDS
Overlapping
sORF
Intronic

E14, BMDC, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

382400

138

TTG...

LVK...

TTG

Alternative
Downstream
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

954613

ATT...

ILE...

ATT

Alternative
Overlapping
sORF
Upstream

E14, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

380265

GTG...

VSR...

GTG

sORF
Upstream
Intronic

3T3, B_cell, Brain,
MEF, R1E, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq		3	sORFs_org_Mouse

384483

ATG...

MPF...

ATG

Alternative
Downstream
Overlapping
sORF

3T3, B_cell, Glioma,
Liver, MEF, MESC,
Brain, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse Johnstone2016
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

36718

CTG...

LGK...

CTG

Intronic
sORF
Alternative
Overlapping
Upstream

Liver, MEF, NSC,
Spleen_B_cell, B_cell, Neutrophil,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse

385047

TTG...

LER...

TTG

Intronic
sORF
Upstream

MEF, Neutrophil, Spleen_B_cell,
3T3, B_cell, Brain,
Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
422157	ENSMUST00000146035	Gtf2h5-203	retained_intron	Ribo-seq		5	sORFs_org_Mouse
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		6	sORFs_org_Mouse

380280

ATG...

MTY...

ATG

sORF
Upstream

3T3, B_cell, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

1190421

AGG...

RPT...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
385569	ENSMUST00000100955	Gtf2h5-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

955910

ATC...

ICT...

ATC

Alternative
Overlapping
sORF
Upstream

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
36349	ENSMUST00000039487	Gtf2h5-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

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