Transcript 500507

Transcript

ID CARD

MetamORF ID

500507

ENSMUST00000186907

Name

Gnas-224

Strand

Biotype

protein_coding

Start-end positions

174297859-174346712

CDS Start-stop positions

174298040-174300217

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:14683

Aliases

5530400H20Rik,
A930027G11Rik, C130027O20Rik, ENSMUSG00000027523,
Galphas, Gnas, Gnas1,
Gnasxl, GPSA, Gs-alpha,
Gsa, GSP, MGI:95777,
NCBI:14683, Nesp, Nesp55,
Nespl, Oed-Sml, Oedsml,
OFF:Gnas, P1, P2,
P3, PHP1A, PHP1B,
POH, SCG6

Chr 2

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
964386	228	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream sORF	Neutrophil
49839	111	CTG ...	LES ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
1053342	210	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream sORF	Neutrophil
46656	177	GTG ...	VEM ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC
99258	75	CTG ...	LWE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
500506	84	GTG ...	VYT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF, NSC, Spleen_B_cell
46930	36	GTG ...	VPA ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC
44941	36	CTG ...	LLP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, NSC
110063	150	CTG ...	LRT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
47302	183	CTG ...	LLV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC
49377	42	GTG ...	VRR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
44244	111	GTG ...	VSS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
739640	51	GTG ...	VQD ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, Neutrophil, NSC
44850	69	ATG ...	MPR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
49892	300	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
50194	102	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
120999	186	GTG ...	VTR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
51191	102	ATG ...	MGL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
49190	171	ATG ...	MGA ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
499043	33	CTG ...	LRT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC
101447	87	GTG ...	VDT ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
49105	30	CTG ...	LES ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
49569	108	ATG ...	MLM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
47051	48	ATG ...	MRE ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
44488	39	ATG ...	MLM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
45100	126	CTG ...	LRT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
101287	33	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil
49187	33	GTG ...	VLE ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
118557	69	CTG ...	LEQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream sORF	E14, MEF, NSC
107292	30	CTG ...	LHV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC
117498	48	GTG ...	VKQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
498265	51	CTG ...	LWS ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
729705	135	GTG ...	VIL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
48548	93	GTG ...	VTS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	E14, NSC, v6-5
109116	57	GTG ...	VRA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, Neutrophil, NSC
51331	33	GTG ...	VTR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
1054637	207	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream sORF	Neutrophil
735256	108	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
51387	63	CTG ...	LQG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
16186	30	CTG ...	LCP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, Neutrophil, NSC
104342	30	CTG ...	LKE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC
50005	45	ATG ...	MVR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Downstream sORF	E14, MEF, Neutrophil, NSC, v6-5
47452	75	ATG ...	MSM ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
49641	150	CTG ...	LRI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5

Export data