Transcript 94049 | MetamORF

Transcript

ID CARD

MetamORF ID

94049

ENSMUST00000087876

Name

Gnas-203

Strand

Biotype

protein_coding

Start-end positions

174297859-174346744

CDS Start-stop positions

174297862-174346388

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:14683

Aliases

5530400H20Rik,
A930027G11Rik, C130027O20Rik, ENSMUSG00000027523,
Galphas, Gnas, Gnas1,
Gnasxl, GPSA, Gs-alpha,
Gsa, GSP, MGI:95777,
NCBI:14683, Nesp, Nesp55,
Nespl, Oed-Sml, Oedsml,
OFF:Gnas, P1, P2,
P3, PHP1A, PHP1B,
POH, SCG6

Chr 2

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
493473	30	CTG ...	LPC ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
46656	177	GTG ...	VEM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
44488	39	ATG ...	MLM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
48548	93	GTG ...	VTS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, Brain
971214	108	ACG ...	TCR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
971024	51	AGG ...	RPT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
499043	33	CTG ...	LRT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
815851	60	ATG ...	MGL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
48591	39	ATG ...	MSA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
49105	30	CTG ...	LES ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
101287	33	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
49377	42	GTG ...	VRR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
45100	126	CTG ...	LRT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, Liver, MEF
49190	171	ATG ...	MGA ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, Liver, MEF
1010018	219	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
16186	30	CTG ...	LCP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
44850	69	ATG ...	MPR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
44244	111	GTG ...	VSS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
101293	45	TTG ...	LRP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver
44820	57	ATG ...	MWA ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
44941	36	CTG ...	LLP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF
500506	84	GTG ...	VYT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
46930	36	GTG ...	VPA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
498265	51	CTG ...	LWS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
105779	54	CTG ...	LES ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
49839	111	CTG ...	LES ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
47452	75	ATG ...	MSM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
47051	48	ATG ...	MRE ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
118557	69	CTG ...	LEQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
15014	87	CTG ...	LPS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
971134	30	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
50194	102	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
47302	183	CTG ...	LLV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
44305	57	ATG ...	MAA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
1009926	222	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
49187	33	GTG ...	VLE ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF
814774	66	ATG ...	MLM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
51331	33	GTG ...	VTR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF

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