Transcript 33615 | MetamORF

Transcript

ID CARD

MetamORF ID

33615

ENSMUST00000168891

Name

Eif4a2-223

Strand

Biotype

protein_coding

Start-end positions

23107479-23114117

CDS Start-stop positions

23108789-23113311

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:13682

Aliases

4833432N07Rik,
BM-010, Ddx2b, eIF-4A-II,
Eif4, eIF4A-II, Eif4a2,
ENSMUSG00000022884, MGI:106906, NCBI:13682,
OFF:Eif4a2

Chr 16

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34614	42	TTG ...	LAE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
371987	45	ATG ...	MWI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
35548	81	ATG ...	MAA ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative sORF Upstream	Brain, C2C12, MEF, Neutrophil, NSC, Testis
794346	114	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35257	63	GTG ...	VKT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Testis
35328	273	TTG ...	LER ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, Testis
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, Testis
35683	288	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
1676989	45	TTG ...	LKE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35718	294	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Testis

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