Gene NCBI:13682 | MetamORF

Gene

ID CARD

NCBI:13682

Aliases

4833432N07Rik
BM-010, Ddx2b, eIF-4A-II
Eif4, eIF4A-II, Eif4a2
ENSMUSG00000022884, MGI:106906, NCBI:13682
OFF:Eif4a2

Chromosome

Transcripts

44 ORFs
18 known transcripts
209 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

852874

ENSMUST00000130483

Eif4a2-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
1003276	99	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
792823	72	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
370337	72	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
368063	96	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
370054	75	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1003455	90	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
372018	147	GTG ...	VIA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF

1046199

ENSMUST00000148085

Eif4a2-218

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, v6-5
374613	162	TTG ...	LAL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, v6-5
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
372516	84	TTG ...	LQA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
691979	39	GTG ...	VFD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5

372548

ENSMUST00000147117

Eif4a2-217

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3
372547	39	GTG ...	VEE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3
368063	96	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
372399	57	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
691979	39	GTG ...	VFD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	3T3
370054	75	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative CDS NMD sORF	3T3
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
794346	114	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell
372516	84	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	3T3
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3
374613	162	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD Overlapping sORF	3T3
34614	42	TTG ...	LAE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain

1185689

ENSMUST00000187168

Eif4a2-224

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
1187883	57	AGG ...	RLK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
370337	72	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E
950930	33	AGG ...	REW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E

33615

ENSMUST00000168891

Eif4a2-223

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34614	42	TTG ...	LAE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
371987	45	ATG ...	MWI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
35548	81	ATG ...	MAA ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative sORF Upstream	Brain, C2C12, MEF, Neutrophil, NSC, Testis
794346	114	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35257	63	GTG ...	VKT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Testis
35328	273	TTG ...	LER ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, Testis
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, Testis
35683	288	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
1676989	45	TTG ...	LKE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
35718	294	GTG ...	VGV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Testis

367972

ENSMUST00000140017

Eif4a2-213

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
372516	84	TTG ...	LQA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
374613	162	TTG ...	LAL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1003455	90	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
368063	96	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
372018	147	GTG ...	VIA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
372399	57	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
370054	75	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
370337	72	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

1148715

ENSMUST00000123413

Eif4a2-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
34614	42	TTG ...	LAE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
372547	39	GTG ...	VEE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	E14
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF

1045905

ENSMUST00000130113

Eif4a2-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
370337	72	TTG ...	LRS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, v6-5
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1003455	90	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
372399	57	TTG ...	LLF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
374613	162	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Liver
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
368063	96	TTG ...	LLK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, Liver, NSC, v6-5
372018	147	GTG ...	VIA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, Liver, NSC
370054	75	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
372516	84	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC, v6-5

976092

ENSMUST00000131871

Eif4a2-210

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35548	81	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD Overlapping sORF	Glioma, Liver, MEF, MESC

368064

ENSMUST00000152129

Eif4a2-221

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
368063	96	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
372018	147	GTG ...	VIA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
1003455	90	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
372399	57	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
372516	84	TTG ...	LQA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
12342	45	ATG ...	MAA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
1003099	90	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
374613	162	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
370054	75	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1003276	99	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF

12343

ENSMUST00000023599

Eif4a2-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35162	84	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
35257	63	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
33893	132	TTG ...	LEI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Skin_tumor, Spleen_B_cell
372399	57	TTG ...	LLF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
34009	30	TTG ...	LHW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
370054	75	CTG ...	LAR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
34749	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
792823	72	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
33679	33	TTG ...	LVL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
34841	96	TTG ...	LEE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
34614	42	TTG ...	LAE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
476739	36	ATG ...	MDQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
370337	72	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
35063	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
950930	33	AGG ...	REW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
35548	81	ATG ...	MAA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell
34253	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
368063	96	TTG ...	LLK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
34933	39	TTG ...	LSC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
33614	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
34531	105	ATG ...	MLA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell

1185623

ENSMUST00000125969

Eif4a2-206

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1188558

144

TTG ...

LDE ...

Ribo-seq

TTG

sORFs_org_Mouse

E14

1185622

ATC ...

IRS ...

Ribo-seq

ATC

moderate

sORFs_org_Mouse

E14

367990

ENSMUST00000130775

Eif4a2-209

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
370337	72	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

378082

ENSMUST00000142031

Eif4a2-215

processed_transcript

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

795220

ATG ...

MMR ...

Ribo-seq

ATG

sORFs_org_Mouse

B_cell, Liver, MEF

378081

ATG ...

MRT ...

Ribo-seq

ATG

sORFs_org_Mouse

3T3, B_cell, Brain,
Liver, MEF, Spleen_B_cell

1002919

ENSMUST00000149328

Eif4a2-219

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
373509	60	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
371409	63	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
12342	45	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
371678	66	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1003455	90	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1003276	99	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain

979859

ENSMUST00000125553

Eif4a2-205

retained_intron

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

34933

TTG ...

LSC ...

Ribo-seq

TTG

moderate

sORFs_org_Mouse

Liver

34009

TTG ...

LHW ...

Ribo-seq

TTG

weak

sORFs_org_Mouse

Liver

1409413

ENSMUST00000077605

Eif4a2-202

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

372547

GTG ...

VEE ...

Ribo-seq

GTG

strong

sORFs_org_Mouse

Brain, Liver

35548

ATG ...

MAA ...

Ribo-seq

ATG

sORFs_org_Mouse

Brain, MEF

3061047

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34531	105	ATG ...	MLA ...	Predicted	ATG		1	Samandi2017	sORF

1149014

ENSMUST00000115341

Eif4a2-203

protein_coding

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

ORF annotations

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

35257

GTG ...

VKT ...

Ribo-seq

GTG

sORFs_org_Mouse

v6-5

ORFs

44 ORFs
18 known transcripts
209 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

371678

GTG...

VLL...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

Liver, MEF, Brain,
3T3, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1148715	ENSMUST00000123413	Eif4a2-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1002919	ENSMUST00000149328	Eif4a2-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
367990	ENSMUST00000130775	Eif4a2-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse

34841

TTG...

LEE...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
Downstream
NMD

E14, MEF, NSC,
v6-5, Liver, R1E,
B_cell, Spleen_B_cell, 3T3,
Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	strong	2	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	strong	3	sORFs_org_Mouse

33614

ATG...

MKC...

ATG

Alternative
Downstream
NMD
Overlapping
sORF
Intronic
InCDS

3T3, E14, MEF,
NSC, v6-5, Testis,
Liver, R1E, Brain,
B_cell, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

34531

105

ATG...

MLA...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

E14, R1E, Brain,
Testis, MEF,
NSC, v6-5, Liver,
3T3, Glioma, MESC,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3061047	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
976092	ENSMUST00000131871	Eif4a2-210	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

34614

TTG...

LAE...

TTG

InCDS
Overlapping
sORF
Alternative
Downstream
NMD

Testis, MEF, v6-5,
B_cell, 3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
1148715	ENSMUST00000123413	Eif4a2-204	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse

372516

TTG...

LQA...

TTG

Intronic
sORF
Downstream
NMD

Brain, Liver, E14,
MEF, NSC, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq		5	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

34253

TTG...

LLV...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
Downstream
NMD

E14, MEF, v6-5,
Brain, R1E, Testis,
3T3, B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	weak	3	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

371409

TTG...

LLS...

TTG

Intronic
sORF
InCDS
NMD
Overlapping

Liver, MEF, Brain,
Neutrophil, NSC, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1148715	ENSMUST00000123413	Eif4a2-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1002919	ENSMUST00000149328	Eif4a2-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
367990	ENSMUST00000130775	Eif4a2-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

373509

TTG...

LSA...

TTG

Intronic
sORF
InCDS
NMD
Overlapping

Liver, MEF, Brain,
3T3, Neutrophil, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1002919	ENSMUST00000149328	Eif4a2-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
367990	ENSMUST00000130775	Eif4a2-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1148715	ENSMUST00000123413	Eif4a2-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse

370337

TTG...

LRS...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

E14, NSC, v6-5,
Brain, R1E, Liver,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
367990	ENSMUST00000130775	Eif4a2-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq		1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

12342

ATG...

MAA...

ATG

Intronic
sORF
InCDS
Overlapping
NMD
Alternative
Upstream

MEF, Neutrophil, v6-5,
B_cell, BMDC, Skin_tumor,
Spleen_B_cell, Brain, 3T3,
Liver, C2C12, Testis,
E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
367990	ENSMUST00000130775	Eif4a2-209	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
976092	ENSMUST00000131871	Eif4a2-210	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1002919	ENSMUST00000149328	Eif4a2-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		2	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq		2	sORFs_org_Mouse

35548

ATG...

MAA...

ATG

InCDS
NMD
Overlapping
sORF
Alternative
Upstream

Glioma, Liver, MEF,
MESC, Brain, C2C12,
Neutrophil, NSC, Testis,
B_cell, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
976092	ENSMUST00000131871	Eif4a2-210	nonsense_mediated_decay	Ribo-seq		1	Johnstone2016
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		9	sORFs_org_Mouse
1409413	ENSMUST00000077605	Eif4a2-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse

35162

ATG...

MFE...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

B_cell, Spleen_B_cell, Brain,
E14, MEF, NSC,
v6-5, R1E, 3T3,
Liver, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	weak	2	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

35257

GTG...

VKT...

GTG

InCDS
Overlapping
sORF
Alternative

B_cell, 3T3, E14,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		3	sORFs_org_Mouse
1149014	ENSMUST00000115341	Eif4a2-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

34009

TTG...

LHW...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
CDS
NMD

Liver, Testis, E14,
R1E, B_cell, Spleen_B_cell,
Brain, 3T3, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
979859	ENSMUST00000125553	Eif4a2-205	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	weak	5	sORFs_org_Mouse

1188558

144

TTG...

LDE...

TTG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185623	ENSMUST00000125969	Eif4a2-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1003455

TTG...

LEA...

TTG

Intronic
sORF

MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1002919	ENSMUST00000149328	Eif4a2-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse

33679

TTG...

LVL...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
Downstream
NMD

Brain, E14, MEF,
NSC, v6-5, B_cell,
Spleen_B_cell, 3T3, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1187883

AGG...

RLK...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

476739

ATG...

MDQ...

ATG

Intronic
sORF
InCDS
Overlapping
Alternative
Downstream
NMD

E14, MEF, NSC,
v6-5, 3T3, Liver,
B_cell, Spleen_B_cell, Glioma,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	strong	5	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
976092	ENSMUST00000131871	Eif4a2-210	nonsense_mediated_decay	Ribo-seq	strong	1	Johnstone2016

372547

GTG...

VEE...

GTG

Downstream
NMD
sORF

Brain, E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
1148715	ENSMUST00000123413	Eif4a2-204	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
1409413	ENSMUST00000077605	Eif4a2-202	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse

34933

TTG...

LSC...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic
CDS
NMD

E14, R1E, Brain,
Liver, MEF, 3T3,
Neutrophil, NSC, v6-5,
Testis, B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
979859	ENSMUST00000125553	Eif4a2-205	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	6	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

33893

132

TTG...

LEI...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

B_cell, Spleen_B_cell, Brain,
MEF, E14, NSC,
v6-5, R1E, Liver,
Testis, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1003276

CTG...

LRG...

CTG

Intronic
sORF

MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1002919	ENSMUST00000149328	Eif4a2-219	retained_intron	Ribo-seq		1	sORFs_org_Mouse

371987

ATG...

MWI...

ATG

Alternative
sORF
Upstream

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

372399

TTG...

LLF...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

E14, NSC, v6-5,
Spleen_B_cell, Brain, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse

35063

CTG...

LKP...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

R1E, 3T3, Liver,
Brain, C2C12, Testis,
B_cell, BMDC, Spleen_B_cell,
E14, MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	4	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

374613

162

TTG...

LAL...

TTG

Intronic
sORF
Downstream
NMD
Overlapping

E14, Liver, Brain,
MEF, NSC, v6-5,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq		4	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		2	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

795220

ATG...

MMR...

ATG

ncRNA
sORF

B_cell, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
378082	ENSMUST00000142031	Eif4a2-215	processed_transcript	Ribo-seq		5	sORFs_org_Mouse

34749

TTG...

LLL...

TTG

Alternative
Downstream
NMD
sORF
Intronic
InCDS
Overlapping

3T3, Brain, R1E,
B_cell, Spleen_B_cell, E14,
MEF, v6-5, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

368063

TTG...

LLK...

TTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping

E14, Liver, NSC,
v6-5, 3T3, Brain,
B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		4	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		2	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

372018

147

GTG...

VIA...

GTG

Intronic
sORF

E14, Liver, NSC,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		1	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		2	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

792823

CTG...

LVA...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

370054

CTG...

LAR...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

E14, NSC, v6-5,
B_cell, Spleen_B_cell, 3T3,
Liver, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1045905	ENSMUST00000130113	Eif4a2-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
852874	ENSMUST00000130483	Eif4a2-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
367972	ENSMUST00000140017	Eif4a2-213	retained_intron	Ribo-seq		2	sORFs_org_Mouse
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse

691979

GTG...

VFD...

GTG

Downstream
NMD
sORF
Intronic

3T3, E14, MEF,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1046199	ENSMUST00000148085	Eif4a2-218	retained_intron	Ribo-seq		4	sORFs_org_Mouse

794346

114

CTG...

LSF...

CTG

sORF
Upstream
Alternative
NMD
Overlapping

MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		1	sORFs_org_Mouse
372548	ENSMUST00000147117	Eif4a2-217	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

35328

273

TTG...

LER...

TTG

Alternative
Overlapping
sORF
Upstream

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		2	sORFs_org_Mouse

378081

ATG...

MRT...

ATG

ncRNA
sORF

3T3, B_cell, Brain,
Liver, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
378082	ENSMUST00000142031	Eif4a2-215	processed_transcript	Ribo-seq		9	sORFs_org_Mouse

1003099

CTG...

LQQ...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
368064	ENSMUST00000152129	Eif4a2-221	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1185622

ATC...

IRS...

ATC

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185623	ENSMUST00000125969	Eif4a2-206	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

950930

AGG...

REW...

AGG

InCDS
Overlapping
sORF

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1185689	ENSMUST00000187168	Eif4a2-224	protein_coding	Ribo-seq		1	sORFs_org_Mouse
12343	ENSMUST00000023599	Eif4a2-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

35683

288

GTG...

VDV...

GTG

Alternative
Overlapping
sORF
Upstream

Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1676989

TTG...

LKE...

TTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		1	sORFs_org_Mouse

35718

294

GTG...

VGV...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell, Brain, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
33615	ENSMUST00000168891	Eif4a2-223	protein_coding	Ribo-seq		4	sORFs_org_Mouse

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