Transcript 73780 | MetamORF

Transcript

ID CARD

MetamORF ID

73780

ENSMUST00000209131

Name

Bub3-207

Strand

Biotype

retained_intron

Start-end positions

131560407-131571892

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:12237

Aliases

AU019800,
AU021329, AU043350, AW146323,
Bub3, C78067, ENSMUSG00000066979,
MGI:1343463, NCBI:12237, OFF:Bub3

Chr 7

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
533170	54	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
915802	72	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
531319	51	TTG ...	LEL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
416193	222	CTG ...	LNQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
73779	30	GTG ...	VTD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Testis
1563892	117	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
530984	39	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
531023	30	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1563820	132	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
535242	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
3631	51	CTG ...	LEW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
915056	45	ATT ...	IQA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
424451	69	CTG ...	LWN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1564394	42	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
533616	129	CTG ...	LGY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
531250	51	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
228606	33	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
226236	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
423529	105	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
214847	30	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
533675	30	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
74319	171	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1564588	48	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
531288	45	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
535191	84	TTG ...	LWA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1564014	156	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1565335	51	TTG ...	LMF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
531915	33	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
532313	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
220856	36	CTG ...	LCA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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