Gene NCBI:12237 | MetamORF

Gene

ID CARD

NCBI:12237

Aliases

AU019800
AU021329, AU043350, AW146323
Bub3, C78067, ENSMUSG00000066979
MGI:1343463, NCBI:12237, OFF:Bub3

Chromosome

Transcripts

56 ORFs
7 known transcripts
124 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

214848

ENSMUST00000084502

Bub3-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
226236	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, R1E, Spleen_B_cell
532313	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
591231	36	TTG ...	LPA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
530984	39	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
233655	114	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
231633	63	ATG ...	MLG ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E
535043	57	CTG ...	LRV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
426437	60	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E
533170	54	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
535191	84	TTG ...	LWA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
214847	30	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
3631	51	CTG ...	LEW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E
228606	33	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
531288	45	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
915056	45	ATT ...	IQA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
234338	57	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
423529	105	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
233892	60	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
422582	51	GTG ...	VLG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
531250	51	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
220856	36	CTG ...	LCA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
531915	33	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
424451	69	CTG ...	LWN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
535242	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

73780

ENSMUST00000209131

Bub3-207

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
533170	54	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
915802	72	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
531319	51	TTG ...	LEL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
416193	222	CTG ...	LNQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
73779	30	GTG ...	VTD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Testis
1563892	117	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
530984	39	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
531023	30	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1563820	132	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
535242	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
3631	51	CTG ...	LEW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
915056	45	ATT ...	IQA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
424451	69	CTG ...	LWN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1564394	42	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
533616	129	CTG ...	LGY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
531250	51	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
228606	33	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
226236	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
423529	105	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
214847	30	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
533675	30	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
74319	171	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1564588	48	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
531288	45	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
535191	84	TTG ...	LWA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1564014	156	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1565335	51	TTG ...	LMF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
531915	33	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
532313	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
220856	36	CTG ...	LCA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

3632

ENSMUST00000207442

Bub3-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
530984	39	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
535242	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor, Spleen_B_cell
531250	51	GTG ...	VPV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
533675	30	CTG ...	LKM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC, Spleen_B_cell, v6-5
220856	36	CTG ...	LCA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
426437	60	CTG ...	LGL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
531288	45	ATG ...	MTP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Neutrophil, NSC, v6-5
3631	51	CTG ...	LEW ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Skin_tumor, Spleen_B_cell
532313	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
228606	33	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
533170	54	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
531319	51	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
423529	105	ATG ...	MAS ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
231633	63	ATG ...	MLG ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
214847	30	GTG ...	VLS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
233655	114	CTG ...	LEV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
531915	33	ATG ...	MLG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, Spleen_B_cell
234338	57	GTG ...	VLS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
233892	60	CTG ...	LVL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, Spleen_B_cell
226236	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
535191	84	TTG ...	LWA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
531023	30	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
533616	129	CTG ...	LGY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

841493

ENSMUST00000207736

Bub3-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1257186	204	GTG ...	VWD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
915802	72	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
422582	51	GTG ...	VLG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, MEF, v6-5
74319	171	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, E14
1254613	39	AGG ...	RPS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	E14
1251649	42	ACG ...	TMP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
73779	30	GTG ...	VTD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
535043	57	CTG ...	LRV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, MEF, v6-5
531915	33	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1255623	180	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1253518	150	GTG ...	VNV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1257325	33	ATC ...	ILK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1252658	39	ATT ...	IRQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1250994	225	ACG ...	TAG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
535242	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14

416194

ENSMUST00000208848

Bub3-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
422582	51	GTG ...	VLG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell
915056	45	ATT ...	IQA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1255509	42	ATA ...	IRL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
423529	105	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1257759	225	AAG ...	KLN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1255245	33	ATC ...	IGS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
416193	222	CTG ...	LNQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	C2C12, MEF

841191

ENSMUST00000208571

Bub3-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
226236	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
1690825	141	CTG ...	LGY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1690847	60	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
533616	129	CTG ...	LGY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1746106	93	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
533170	54	TTG ...	LLE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
531319	51	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
535242	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	B_cell
916663	81	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

1068419

ENSMUST00000207231

Bub3-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
228606	33	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, MEF, NSC
226236	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	MEF, v6-5
1068445	258	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Neutrophil
533616	129	CTG ...	LGY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	E14, MEF, NSC
423529	105	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	NSC
1068418	252	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Neutrophil
535191	84	TTG ...	LWA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Neutrophil
214847	30	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	E14, MEF
532313	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Neutrophil
4152	84	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, MEF
3631	51	CTG ...	LEW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	MEF, NSC

3021384

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
423529	105	ATG ...	MAS ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

56 ORFs
7 known transcripts
124 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

226236

CTG...

LSR...

CTG

InCDS
Overlapping
sORF
Intronic

Brain, Liver, R1E,
Spleen_B_cell, B_cell, MEF,
v6-5, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

533170

TTG...

LLE...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell, MEF,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

532313

ATG...

MCS...

ATG

InCDS
Overlapping
sORF
Intronic

Glioma, Liver, MEF,
MESC, Spleen_B_cell, 3T3,
Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

530984

ATG...

MPL...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Spleen_B_cell, Glioma, Liver,
MEF, MESC, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	moderate	1	Johnstone2016
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1257186

204

GTG...

VWD...

GTG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

422582

GTG...

VLG...

GTG

Intronic
sORF
Alternative
NMD
Upstream

3T3, E14, Spleen_B_cell,
B_cell, MEF, v6-5,
R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq		3	sORFs_org_Mouse
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

4152

CTG...

LEV...

CTG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD
Intronic

Brain, R1E, 3T3,
Skin_tumor, Spleen_B_cell, MEF,
E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq		3	sORFs_org_Mouse
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

915802

ATC...

IRQ...

ATC

Intronic
sORF
Alternative
Downstream
NMD

BMDC, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

535242

ATG...

MRW...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic
Downstream
NMD

3T3, BMDC, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5, Brain,
B_cell, Glioma, Liver,
MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	weak	8	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	1	Johnstone2016
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

531319

TTG...

LEL...

TTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, 3T3, Spleen_B_cell,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

416193

222

CTG...

LNQ...

CTG

Intronic
sORF

BMDC, Brain, C2C12,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

73779

GTG...

VTD...

GTG

Intronic
sORF
Downstream
NMD

Brain, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		3	sORFs_org_Mouse
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

591231

TTG...

LPA...

TTG

sORF
Upstream

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1690825

141

CTG...

LGY...

CTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

228606

CTG...

LVL...

CTG

sORF
Alternative
InCDS
Overlapping
Intronic

E14, MEF, NSC,
3T3, Liver, Spleen_B_cell,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq		3	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1068445

258

CTG...

LSV...

CTG

sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

915056

ATT...

IQA...

ATT

Intronic
sORF
Alternative
InCDS
Overlapping

E14, BMDC, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

74319

171

CTG...

LCQ...

CTG

Downstream
NMD
sORF
Intronic

Brain, E14, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		2	sORFs_org_Mouse

531250

GTG...

VPV...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, E14, MEF,
v6-5, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

533675

CTG...

LKM...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, E14, NSC,
Spleen_B_cell, v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

220856

CTG...

LCA...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Spleen_B_cell,
Brain, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1254613

AGG...

RPS...

AGG

Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

233655

114

CTG...

LEV...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, 3T3,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse

426437

CTG...

LGL...

CTG

Alternative
InCDS
Overlapping
sORF

3T3, BMDC, Brain,
E14, MEF, Neutrophil,
Spleen_B_cell, Liver, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		8	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1251649

ACG...

TMP...

ACG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

531288

ATG...

MTP...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, E14, Neutrophil,
NSC, v6-5, Spleen_B_cell,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	weak	5	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

533616

129

CTG...

LGY...

CTG

sORF
Alternative
InCDS
Overlapping
Intronic

E14, MEF, NSC,
B_cell, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq		4	sORFs_org_Mouse
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

231633

ATG...

MLG...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, E14, Glioma,
Liver, MEF, MESC,
R1E, 3T3, BMDC,
Neutrophil, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		4	sORFs_org_Mouse Johnstone2016
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		8	sORFs_org_Mouse

423529

105

ATG...

MAS...

ATG

sORF
Intronic
Alternative
InCDS
Overlapping

NSC, E14, 3T3,
BMDC, Spleen_B_cell, Brain,
Glioma, Liver, MEF,
MESC,

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	strong	1	Johnstone2016
3021384	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017

1563892

117

GTG...

VPA...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1690847

CTG...

LRL...

CTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1068418

252

GTG...

VSG...

GTG

sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

535043

CTG...

LRV...

CTG

Alternative
sORF
Upstream
NMD

3T3, Spleen_B_cell, B_cell,
MEF, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq	weak	3	sORFs_org_Mouse

535191

TTG...

LWA...

TTG

sORF
InCDS
Overlapping
Intronic

Neutrophil, R1E, Spleen_B_cell,
3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

3631

CTG...

LEW...

CTG

Alternative
InCDS
Overlapping
sORF
Intronic

3T3, BMDC, Brain,
Skin_tumor, Spleen_B_cell, Liver,
R1E, MEF, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq	moderate	5	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse

531023

CTG...

LGL...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

214847

GTG...

VLS...

GTG

sORF
Alternative
InCDS
Overlapping
Intronic

E14, MEF, Brain,
R1E, 3T3, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1068419	ENSMUST00000207231	Bub3-202	protein_coding	Ribo-seq		2	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1255509

ATA...

IRL...

ATA

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

1563820

132

GTG...

VRL...

GTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1746106

CTG...

LEV...

CTG

Alternative
InCDS
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

531915

ATG...

MLG...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping
Intronic

E14, Neutrophil, Spleen_B_cell,
R1E, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

424451

CTG...

LWN...

CTG

Intronic
sORF
Alternative
InCDS
Overlapping

Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1255623

180

AAG...

KKR...

AAG

Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1564394

TTG...

LLC...

TTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1257759

225

AAG...

KLN...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

1255245

ATC...

IGS...

ATC

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
416194	ENSMUST00000208848	Bub3-206	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

234338

GTG...

VLS...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, 3T3,
B_cell, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1253518

150

GTG...

VNV...

GTG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1257325

ATC...

ILK...

ATC

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

1564588

ATG...

MFP...

ATG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

233892

CTG...

LVL...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, R1E, 3T3,
B_cell, BMDC, Liver,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
214848	ENSMUST00000084502	Bub3-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3632	ENSMUST00000207442	Bub3-203	protein_coding	Ribo-seq		6	sORFs_org_Mouse

1564014

156

CTG...

LVS...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1565335

TTG...

LMF...

TTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
73780	ENSMUST00000209131	Bub3-207	retained_intron	Ribo-seq		1	sORFs_org_Mouse

916663

ATC...

IRQ...

ATC

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841191	ENSMUST00000208571	Bub3-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1252658

ATT...

IRQ...

ATT

Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1250994

225

ACG...

TAG...

ACG

Alternative
Downstream
NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
841493	ENSMUST00000207736	Bub3-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

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