Transcript 191983

Transcript

ID CARD

MetamORF ID

191983

ENSMUST00000204978

Name

Ndufa4-205

Strand

Biotype

protein_coding

Start-end positions

11900292-11907483

CDS Start-stop positions

11900535-11907365

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:17992

Aliases

ENSMUSG00000029632,
MGI:107686, MLRQ, NCBI:17992,
Ndufa4, OFF:Ndufa4

Chr 6

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
836890	36	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
67508	75	CTG ...	LRV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, C2C12, MEF
415458	84	ATC ...	IFS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, Liver
207497	57	GTG ...	VPQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, MEF
1437625	72	TTG ...	LDV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF Upstream	Liver, MEF, R1E
1438041	78	GTG ...	VTL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	Liver, MEF, R1E
70099	51	TTG ...	LQK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
202630	51	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
415624	84	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
69173	57	GTG ...	VPQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF
71416	117	GTG ...	VFH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
210641	75	CTG ...	LRV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, C2C12, MEF
69253	90	CTG ...	LCR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, C2C12
70410	33	GTG ...	VCP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, Liver, MEF

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