Gene NCBI:17992 | MetamORF

Gene

ID CARD

NCBI:17992

Aliases

ENSMUSG00000029632
MGI:107686, MLRQ, NCBI:17992
Ndufa4, OFF:Ndufa4

Chromosome

Transcripts

26 ORFs
5 known transcripts
48 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

835031

ENSMUST00000203801

Ndufa4-202

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
67508	75	CTG ...	LRV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver
69173	57	GTG ...	VPQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
70410	33	GTG ...	VCP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver
415458	84	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
836580	87	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
69253	90	CTG ...	LCR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Liver
202630	51	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
1246675	45	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
986617	108	GTG ...	VFH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
836890	36	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
1247973	48	AGG ...	RGY ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
986755	30	TTG ...	LAL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver

191983

ENSMUST00000204978

Ndufa4-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
836890	36	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
67508	75	CTG ...	LRV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, C2C12, MEF
415458	84	ATC ...	IFS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, Liver
207497	57	GTG ...	VPQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, MEF
1437625	72	TTG ...	LDV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF Upstream	Liver, MEF, R1E
1438041	78	GTG ...	VTL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	Liver, MEF, R1E
70099	51	TTG ...	LQK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
202630	51	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
415624	84	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
69173	57	GTG ...	VPQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF
71416	117	GTG ...	VFH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
210641	75	CTG ...	LRV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, C2C12, MEF
69253	90	CTG ...	LCR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, C2C12
70410	33	GTG ...	VCP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, Liver, MEF

3563

ENSMUST00000031637

Ndufa4-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
71416	117	GTG ...	VFH ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
70099	51	TTG ...	LQK ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	sORF Upstream	Liver, NSC, R1E, Spleen_B_cell, Testis, v6-5
3562	207	TTG ...	LIP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Overlapping sORF Upstream	E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Testis, v6-5
69173	57	GTG ...	VPQ ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
69253	90	CTG ...	LCR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Neutrophil, Testis
67508	75	CTG ...	LRV ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
202630	51	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
70410	33	GTG ...	VCP ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	sORF Upstream	Brain, E14, Liver, Neutrophil, Spleen_B_cell, Testis, v6-5

586672

ENSMUST00000204714

Ndufa4-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
207497	57	GTG ...	VPQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
69173	57	GTG ...	VPQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
586671	75	CTG ...	LRV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF
910789	84	ATC ...	IFS ...	Ribo-seq	ATC		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
69253	90	CTG ...	LCR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
71416	117	GTG ...	VFH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF

575169

ENSMUST00000204084

Ndufa4-203

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
69253	90	CTG ...	LCR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Liver
1249087	57	ATC ...	ILG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
71416	117	GTG ...	VFH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
202630	51	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
1248584	186	ATT ...	IGA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
1249521	42	AAG ...	KKH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
587808	207	TTG ...	LIP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Liver
69173	57	GTG ...	VPQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver

ORFs

26 ORFs
5 known transcripts
48 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

67508

CTG...

LRV...

CTG

Intronic
sORF
Alternative
Overlapping
Upstream

B_cell, E14, Liver,
BMDC, Brain, C2C12,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		3	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		4	sORFs_org_Mouse
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq		11	sORFs_org_Mouse

836890

TTG...

LEQ...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic

MEF, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

415458

ATC...

IFS...

ATC

Alternative
Overlapping
sORF
Upstream
Intronic

C2C12, Liver, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

207497

GTG...

VPQ...

GTG

Alternative
Overlapping
sORF
Upstream

B_cell, BMDC, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		4	sORFs_org_Mouse
586672	ENSMUST00000204714	Ndufa4-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

69173

GTG...

VPQ...

GTG

Intronic
sORF
Alternative
Overlapping
Upstream

B_cell, Liver, Brain,
MEF, E14, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5, BMDC,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse
586672	ENSMUST00000204714	Ndufa4-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq		11	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		3	sORFs_org_Mouse
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse

71416

117

GTG...

VFH...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Testis, B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq		9	sORFs_org_Mouse
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
586672	ENSMUST00000204714	Ndufa4-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

69253

CTG...

LCR...

CTG

Alternative
sORF
Upstream
Intronic
Overlapping

Liver, E14, Brain,
MEF, Neutrophil, Testis,
B_cell, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		3	sORFs_org_Mouse
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq		5	sORFs_org_Mouse
586672	ENSMUST00000204714	Ndufa4-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse

70410

GTG...

VCP...

GTG

Intronic
sORF
Upstream

B_cell, E14, Liver,
Brain, Neutrophil, Spleen_B_cell,
Testis, v6-5, BMDC,
C2C12, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq	moderate	3	sORFs_org_Mouse
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

70099

TTG...

LQK...

TTG

sORF
Upstream

Liver, NSC, R1E,
Spleen_B_cell, Testis, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

3562

207

TTG...

LIP...

TTG

Overlapping
sORF
Upstream

E14, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq		8	sORFs_org_Mouse

1249087

ATC...

ILG...

ATC

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1437625

TTG...

LDV...

TTG

sORF
Upstream

Liver, MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

202630

CTG...

LGQ...

CTG

InCDS
Overlapping
sORF
Intronic

3T3, Liver, B_cell,
MEF, Brain, E14,
NSC, R1E, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3563	ENSMUST00000031637	Ndufa4-201	protein_coding	Ribo-seq	moderate	8	sORFs_org_Mouse

586671

CTG...

LRV...

CTG

Alternative
Overlapping
sORF
Upstream

3T3, Brain, E14,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
586672	ENSMUST00000204714	Ndufa4-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

910789

ATC...

IFS...

ATC

Alternative
Overlapping
sORF
Upstream

BMDC, E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
586672	ENSMUST00000204714	Ndufa4-204	protein_coding	Ribo-seq		3	sORFs_org_Mouse

1438041

GTG...

VTL...

GTG

sORF
Upstream

Liver, MEF, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse

836580

TTG...

LFL...

TTG

Intronic
sORF

B_cell, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		2	sORFs_org_Mouse

1248584

186

ATT...

IGA...

ATT

Overlapping
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1249521

AAG...

KKH...

AAG

Alternative
sORF
Upstream

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		1	sORFs_org_Mouse

587808

207

TTG...

LIP...

TTG

Overlapping
sORF
Upstream

3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
575169	ENSMUST00000204084	Ndufa4-203	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1246675

AAG...

KRL...

AAG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

415624

ATC...

IFS...

ATC

Alternative
Overlapping
sORF
Upstream

C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

986617

108

GTG...

VFH...

GTG

Intronic
sORF

Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq		1	sORFs_org_Mouse

210641

CTG...

LRV...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, BMDC, Brain,
C2C12, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
191983	ENSMUST00000204978	Ndufa4-205	protein_coding	Ribo-seq		5	sORFs_org_Mouse

1247973

AGG...

RGY...

AGG

Intronic
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse

986755

TTG...

LAL...

TTG

Intronic
sORF

E14, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
835031	ENSMUST00000203801	Ndufa4-202	retained_intron	Ribo-seq	moderate	2	sORFs_org_Mouse

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