Transcript 893097

Transcript

ID CARD

MetamORF ID

893097

ENSMUST00000200224

Name

Pigk-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

152714123-152785653

CDS Start-stop positions

152714135-152742528

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:329777

Aliases

3000001O05Rik,
ENSMUSG00000039047, Gm38470, MGI:1913863,
NCBI:329777, OFF:Pigk, PIG-K,
Pigk

Chr 3

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
502721	96	GTG ...	VCT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
138449	66	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
138773	75	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
139394	69	CTG ...	LWA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
504512	96	GTG ...	VFS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, v6-5
140373	222	GTG ...	VCP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
128807	201	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
54101	150	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1013132	57	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
54142	153	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
506522	90	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
52582	135	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
539908	30	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
127078	33	GTG ...	VDT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF
133992	81	TTG ...	LKF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	MEF, R1E
52620	102	GTG ...	VQC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
54488	45	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
51874	60	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
139834	39	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
53696	30	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
138920	39	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
52239	48	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
540713	69	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
133361	36	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
504956	150	CTG ...	LML ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, v6-5
132186	72	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1646281	93	ATG ...	MCE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
135308	45	TTG ...	LQM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
135707	69	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
53264	156	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF

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