Gene NCBI:329777 | MetamORF

Gene

ID CARD

NCBI:329777

Aliases

3000001O05Rik
ENSMUSG00000039047, Gm38470, MGI:1913863
NCBI:329777, OFF:Pigk, PIG-K
Pigk

Chromosome

Transcripts

77 ORFs
8 known transcripts
208 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

51833

ENSMUST00000159899

Pigk-204

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54682	33	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
52239	48	CTG ...	LDI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
54942	102	ATG ...	MLG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, Testis
54944	216	ATG ...	MSC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
54101	150	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
53696	30	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
55292	33	ATG ...	MWK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell, Testis
53403	42	TTG ...	LPG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
141858	108	GTG ...	VDT ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, Spleen_B_cell, v6-5
507597	33	GTG ...	VGF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
54838	48	ATG ...	MCM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, Testis, v6-5
55484	120	CTG ...	LMT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis, v6-5
54142	153	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
51832	42	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
55125	123	TTG ...	LLM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Testis, v6-5
55527	42	ATG ...	MET ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, Testis
141725	243	GTG ...	VRS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF
54488	45	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
55069	198	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
51874	60	GTG ...	VCR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
52620	102	GTG ...	VQC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
55486	117	ATG ...	MTW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, Testis, v6-5
55502	147	GTG ...	VCA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Testis
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
53264	156	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
52582	135	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis

502625

ENSMUST00000161596

Pigk-206

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
51874	60	GTG ...	VCR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1013372	147	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
133361	36	CTG ...	LTF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
130857	132	GTG ...	VEN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
1013132	57	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
139394	69	CTG ...	LWA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
54682	33	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
140373	222	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
127078	33	GTG ...	VDT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
505403	84	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
506522	90	CTG ...	LRV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
52239	48	CTG ...	LDI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
502721	96	GTG ...	VCT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
133992	81	TTG ...	LKF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Liver, Spleen_B_cell
139834	39	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
133247	111	TTG ...	LTG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
504063	75	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
135308	45	TTG ...	LQM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
51832	42	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1221284	102	TTG ...	LEF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
138773	75	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
506327	66	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Spleen_B_cell
138920	39	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
52620	102	GTG ...	VQC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Spleen_B_cell
128807	201	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
53403	42	TTG ...	LPG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
504512	96	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1218288	144	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
504956	150	CTG ...	LML ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
132009	66	GTG ...	VYG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell

127550

ENSMUST00000051510

Pigk-202

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
139834	39	ATG ...	MRL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
1013694	45	GTG ...	VDY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
135707	69	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
52239	48	CTG ...	LDI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
1648945	75	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
133992	81	TTG ...	LKF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, v6-5
51874	60	GTG ...	VCR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
133247	111	TTG ...	LTG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
134603	90	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
54682	33	TTG ...	LNR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
138449	66	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
133361	36	CTG ...	LTF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
1014649	51	GTG ...	VEV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1013372	147	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
139752	114	TTG ...	LSC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
138773	75	CTG ...	LGL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil
140373	222	GTG ...	VCP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil, v6-5
138493	96	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
972450	30	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	BMDC
1646927	66	ATG ...	MWK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
136248	123	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	Brain
132186	72	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
128807	201	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil, v6-5
1650600	78	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
132009	66	GTG ...	VYG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Brain, MEF, Neutrophil, v6-5
130857	132	GTG ...	VEN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
54488	45	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF	Brain, MEF, v6-5
894232	84	AAG ...	KNM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
1649875	75	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
1056271	114	GTG ...	VEI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
135308	45	TTG ...	LQM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
53403	42	TTG ...	LPG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, v6-5
53696	30	CTG ...	LCV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	NMD sORF	Brain, MEF, v6-5
1649549	81	ATG ...	MCM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
139394	69	CTG ...	LWA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil, NSC
136643	120	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
138920	39	GTG ...	VGF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
140315	84	TTG ...	LEF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
1057204	123	GTG ...	VRK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
133880	99	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain

127079

ENSMUST00000045029

Pigk-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55484	120	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
53264	156	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55125	123	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
55527	42	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
52620	102	GTG ...	VQC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
54142	153	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
127078	33	GTG ...	VDT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
55486	117	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
141858	108	GTG ...	VDT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
55069	198	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
55502	147	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54101	150	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
54944	216	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
55292	33	ATG ...	MWK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
54942	102	ATG ...	MLG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
54838	48	ATG ...	MCM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
51832	42	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

893097

ENSMUST00000200224

Pigk-209

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
502721	96	GTG ...	VCT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
138449	66	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
138773	75	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
139394	69	CTG ...	LWA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
504512	96	GTG ...	VFS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, v6-5
140373	222	GTG ...	VCP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
128807	201	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
54101	150	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1013132	57	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
54142	153	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
506522	90	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
52582	135	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
539908	30	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
127078	33	GTG ...	VDT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF
133992	81	TTG ...	LKF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	MEF, R1E
52620	102	GTG ...	VQC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
54488	45	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
51874	60	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
139834	39	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
53696	30	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
138920	39	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
52239	48	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
540713	69	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
133361	36	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
504956	150	CTG ...	LML ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil, v6-5
132186	72	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1646281	93	ATG ...	MCE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
135308	45	TTG ...	LQM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
135707	69	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
53264	156	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF

536147

ENSMUST00000162642

Pigk-207

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
140315	84	TTG ...	LEF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
136248	123	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
504512	96	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Liver
540713	69	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
51832	42	TTG ...	LQI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
52239	48	CTG ...	LDI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC
139752	114	TTG ...	LSC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
127078	33	GTG ...	VDT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver, MEF
54488	45	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver
136643	120	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
132009	66	GTG ...	VYG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
504956	150	CTG ...	LML ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
749182	117	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
140373	222	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
502721	96	GTG ...	VCT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Liver
139394	69	CTG ...	LWA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
52620	102	GTG ...	VQC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver
505403	84	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver
138493	96	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
540729	51	ATG ...	MSW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
134603	90	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
506327	66	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver
128807	201	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
133247	111	TTG ...	LTG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Liver
506522	90	CTG ...	LRV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver
539908	30	ATG ...	MLS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC
504063	75	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver
1013132	57	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
51874	60	GTG ...	VCR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC
748701	84	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
133992	81	TTG ...	LKF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
133361	36	CTG ...	LTF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
53696	30	CTG ...	LCV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, BMDC
138773	75	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
53403	42	TTG ...	LPG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
130857	132	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Liver

1728371

ENSMUST00000162835

Pigk-208

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54183	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
504956	150	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
127078	33	GTG ...	VDT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
504063	75	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
54142	153	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1013132	57	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
132009	66	GTG ...	VYG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
506522	90	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
53264	156	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
540713	69	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
52620	102	GTG ...	VQC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1649875	75	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1014649	51	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
506327	66	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
505403	84	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1649549	81	ATG ...	MCM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
54101	150	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
504512	96	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
51832	42	TTG ...	LQI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
502721	96	GTG ...	VCT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E

3028475

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55486	117	ATG ...	MTW ...	Predicted	ATG		1	Samandi2017	sORF

1013470

ENSMUST00000159045

Pigk-203

processed_transcript

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
132009	66	GTG ...	VYG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
504956	150	CTG ...	LML ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1014649	51	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
504512	96	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1013694	45	GTG ...	VDY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

ORFs

77 ORFs
8 known transcripts
208 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

54682

TTG...

LNR...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

Testis, Spleen_B_cell, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

51874

GTG...

VCR...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

Spleen_B_cell, Brain, R1E,
Testis, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

139834

ATG...

MRL...

ATG

NMD
sORF
Alternative
Downstream
InCDS
Overlapping

Brain, MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1013372

147

CTG...

LIT...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55484

120

CTG...

LMT...

CTG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3, MEF,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

52239

CTG...

LDI...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Downstream

Testis, Brain, 3T3,
BMDC, Spleen_B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

53264

156

TTG...

LLM...

TTG

Alternative
InCDS
Overlapping
sORF
Intronic
NMD

Brain, MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

502721

GTG...

VCT...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

E14, MEF, Neutrophil,
v6-5, 3T3, Liver,
Brain, Spleen_B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

140315

TTG...

LEF...

TTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

54942

102

ATG...

MLG...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, Spleen_B_cell,
Testis, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1013694

GTG...

VDY...

GTG

NMD
sORF
ncRNA

MEF, Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1013470	ENSMUST00000159045	Pigk-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

54944

216

ATG...

MSC...

ATG

InCDS
Overlapping
sORF

3T3, Testis, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

138449

TTG...

LLF...

TTG

Downstream
NMD
sORF

MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

138773

CTG...

LGL...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

R1E, Brain, Neutrophil,
Spleen_B_cell, 3T3, BMDC,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq	strong	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	strong	2	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

54101

150

ATG...

MTW...

ATG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

Testis, MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

133361

CTG...

LTF...

CTG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

Spleen_B_cell, Brain, R1E,
3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

54183

ATG...

MLQ...

ATG

Intronic
sORF
Alternative
InCDS
Overlapping
NMD

MEF, Brain, Spleen_B_cell,
Glioma, Liver, MESC,
Testis, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

135707

TTG...

LLL...

TTG

NMD
sORF
Downstream

Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

53696

CTG...

LCV...

CTG

InCDS
Overlapping
sORF
Downstream
NMD

Testis, MEF, Brain,
v6-5, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	weak	4	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse

139394

CTG...

LWA...

CTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

R1E, Brain, Spleen_B_cell,
3T3, BMDC, Liver,
Neutrophil, NSC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

504512

GTG...

VFS...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
ncRNA
Intronic

MEF, Neutrophil, v6-5,
3T3, Liver, Brain,
Spleen_B_cell, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1013470	ENSMUST00000159045	Pigk-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse

136248

123

ATG...

MLS...

ATG

InCDS
NMD
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

140373

222

GTG...

VCP...

GTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

MEF, R1E, Brain,
Liver, Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

55292

ATG...

MWK...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, B_cell, MEF,
Spleen_B_cell, Testis, Brain,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1648945

TTG...

LLL...

TTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

540713

CTG...

LTH...

CTG

InCDS
NMD
Overlapping
sORF
Intronic

3T3, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

133992

TTG...

LKF...

TTG

NMD
sORF
Downstream
Overlapping
InCDS

Brain, E14, MEF,
Neutrophil, v6-5, R1E,
B_cell, Liver, Spleen_B_cell,
3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		6	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55125

123

TTG...

LLM...

TTG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3, MEF,
Testis, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

51832

TTG...

LQI...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic

3T3, BMDC, Liver,
Testis, Spleen_B_cell, Brain,
MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

130857

132

GTG...

VEN...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

Brain, 3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

504956

150

CTG...

LML...

CTG

Intronic
sORF
Alternative
InCDS
NMD
Overlapping
ncRNA

MEF, R1E, 3T3,
BMDC, Liver, Brain,
Neutrophil, v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
1013470	ENSMUST00000159045	Pigk-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

128807

201

GTG...

VST...

GTG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

R1E, Liver, Brain,
Neutrophil, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

53403

TTG...

LPG...

TTG

Alternative
InCDS
Overlapping
sORF
NMD

Testis, Brain, v6-5,
Spleen_B_cell, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	weak	2	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

141858

108

GTG...

VDT...

GTG

InCDS
Overlapping
sORF

3T3, BMDC, Liver,
MEF, Spleen_B_cell, v6-5,
Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		7	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

127078

GTG...

VDT...

GTG

Intronic
sORF
InCDS
NMD
Overlapping

MEF, 3T3, Liver,
Brain, Spleen_B_cell, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

1013132

TTG...

LSL...

TTG

InCDS
NMD
Overlapping
sORF
Intronic

Brain, E14, MEF,
Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55527

ATG...

MET...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3, MEF,
Spleen_B_cell, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

133247

111

TTG...

LTG...

TTG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, 3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

507597

GTG...

VGF...

GTG

InCDS
Overlapping
sORF

MEF, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		4	sORFs_org_Mouse

139752

114

TTG...

LSC...

TTG

InCDS
NMD
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

54838

ATG...

MCM...

ATG

Alternative
InCDS
Overlapping
sORF

3T3, MEF, Spleen_B_cell,
Testis, v6-5, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

54142

153

CTG...

LMT...

CTG

Alternative
InCDS
Overlapping
sORF
NMD
Intronic

Testis, MEF, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

504063

CTG...

LAA...

CTG

Intronic
sORF
InCDS
NMD
Overlapping

MEF, Brain, Spleen_B_cell,
3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

54488

GTG...

VSQ...

GTG

InCDS
NMD
Overlapping
sORF
Downstream

3T3, Liver, MEF,
Testis, Brain, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	3	sORFs_org_Mouse

52620

102

GTG...

VQC...

GTG

InCDS
Overlapping
sORF
NMD
Intronic

Brain, MEF, v6-5,
3T3, Liver, Spleen_B_cell,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

506522

CTG...

LRV...

CTG

InCDS
NMD
Overlapping
sORF
Intronic

BMDC, Brain, Spleen_B_cell,
MEF, 3T3, Liver

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

134603

CTG...

LRL...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, 3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

52582

135

ATG...

MLG...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		1	sORFs_org_Mouse

136643

120

TTG...

LSL...

TTG

InCDS
NMD
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

539908

ATG...

MLS...

ATG

Alternative
Downstream
NMD
sORF
InCDS
Overlapping

Glioma, Liver, MEF,
MESC, 3T3, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq	moderate	1	Johnstone2016
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	2	sORFs_org_Mouse

132009

GTG...

VYG...

GTG

Alternative
InCDS
NMD
Overlapping
sORF
Intronic
ncRNA

Liver, MEF, R1E,
Brain, Neutrophil, v6-5,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		2	sORFs_org_Mouse
1013470	ENSMUST00000159045	Pigk-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

505403

GTG...

VAT...

GTG

InCDS
NMD
Overlapping
sORF
Intronic

Brain, Spleen_B_cell, 3T3,
Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse

1014649

GTG...

VEV...

GTG

NMD
sORF
Intronic
ncRNA

MEF, Neutrophil, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
1013470	ENSMUST00000159045	Pigk-203	processed_transcript	Ribo-seq		1	sORFs_org_Mouse

749182

117

CTG...

LAP...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55486

117

ATG...

MTW...

ATG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3,
MEF, Spleen_B_cell, Testis,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
3028475	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		6	sORFs_org_Mouse

138493

CTG...

LTL...

CTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq	moderate	1	sORFs_org_Mouse

540729

ATG...

MSW...

ATG

Alternative
InCDS
NMD
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq	weak	1	sORFs_org_Mouse

506327

TTG...

LAL...

TTG

InCDS
NMD
Overlapping
sORF
Intronic

3T3, Liver, MEF,
Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

972450

CTG...

LSF...

CTG

NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1646927

ATG...

MWK...

ATG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

141725

243

GTG...

VRS...

GTG

Alternative
Overlapping
sORF
Upstream

3T3, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		4	sORFs_org_Mouse

135308

TTG...

LQM...

TTG

Alternative
InCDS
NMD
Overlapping
sORF
Downstream

Spleen_B_cell, Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55069

198

TTG...

LTL...

TTG

InCDS
Overlapping
sORF

Brain, 3T3, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		2	sORFs_org_Mouse

1221284

102

TTG...

LEF...

TTG

InCDS
NMD
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

55502

147

GTG...

VCA...

GTG

Alternative
InCDS
Overlapping
sORF

Brain, 3T3, E14,
MEF, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127079	ENSMUST00000045029	Pigk-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse
51833	ENSMUST00000159899	Pigk-204	protein_coding	Ribo-seq		5	sORFs_org_Mouse

132186

TTG...

LLL...

TTG

NMD
sORF
Downstream

Brain, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1649875

ATG...

MET...

ATG

Intronic
sORF
NMD

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

138920

GTG...

VGF...

GTG

Downstream
NMD
sORF
InCDS
Overlapping

MEF, Spleen_B_cell, Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

1649549

ATG...

MCM...

ATG

Intronic
sORF
NMD

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
1728371	ENSMUST00000162835	Pigk-208	retained_intron	Ribo-seq		1	sORFs_org_Mouse
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1650600

CTG...

LLL...

CTG

NMD
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

894232

AAG...

KNM...

AAG

NMD
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1056271

114

GTG...

VEI...

GTG

NMD
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

748701

GTG...

VGA...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

3T3

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
536147	ENSMUST00000162642	Pigk-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1646281

ATG...

MCE...

ATG

InCDS
NMD
Overlapping
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
893097	ENSMUST00000200224	Pigk-209	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1218288

144

GTG...

VCA...

GTG

Alternative
InCDS
NMD
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
502625	ENSMUST00000161596	Pigk-206	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1057204

123

GTG...

VRK...

GTG

NMD
sORF

Neutrophil

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

133880

GTG...

VCS...

GTG

NMD
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
127550	ENSMUST00000051510	Pigk-202	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

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