Transcript 433778

Transcript

ID CARD

MetamORF ID

433778

ENSMUST00000195231

Name

Gnai2-209

Strand

Biotype

retained_intron

Start-end positions

107615656-107616512

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:14678

Aliases

C76432,
ENSMUSG00000032562, Galphai2, Gia,
Gnai-2, Gnai2, MGI:95772,
NCBI:14678, OFF:Gnai2

Chr 9

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
438607	66	CTG ...	LQQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC, Spleen_B_cell
258103	30	TTG ...	LKK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E
922833	54	ACG ...	TCS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
922193	105	ACG ...	THF ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
922508	111	ATC ...	IYT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
921836	105	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
267956	102	TTG ...	LTA ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC, Spleen_B_cell
436930	36	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1073862	39	CTG ...	LTI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, R1E
434853	36	ATG ...	MTW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, NSC, R1E
438365	51	GTG ...	VRH ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
922457	57	AAG ...	KIT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
433777	69	CTG ...	LFE ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, NSC, R1E, Spleen_B_cell
437427	141	CTG ...	LFD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
923010	78	AAG ...	KNV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
924900	150	AAG ...	KFE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
433475	45	TTG ...	LCS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
924288	159	ATC ...	IQS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
438689	54	GTG ...	VVH ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC, R1E, Spleen_B_cell
435328	39	TTG ...	LRA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC
921517	36	ATC ...	IKN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
922275	78	AAG ...	KKD ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC

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