Metam
ORF

Logo

Gene

Gene

ID CARD

ID

NCBI:14678

Aliases

C76432
ENSMUSG00000032562, Galphai2, Gia
Gnai-2, Gnai2, MGI:95772
NCBI:14678, OFF:Gnai2

Chromosome

9

Transcripts

77 ORFs
10 known transcripts
158 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

433476 ENSMUST00000055704 Gnai2-201 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

438365 51

GTG ...

VRH ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
85745 84

GTG ...

VGR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
261867 87

ATG ...

MKM ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
433926 87

TTG ...

LMW ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF
271648 186

CTG ...

LIP ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF
6672 45

GTG ...

VTT ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
258103 30

TTG ...

LKK ...

Ribo-seq
TTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
438607 66

CTG ...

LQQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
87552 69

CTG ...

LST ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Spleen_B_cell
269677 66

CTG ...

LSA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
1693309 51

CTG ...

LWP ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
MEF
271806 189

TTG ...

LLI ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF
434853 36

ATG ...

MTW ...

Ribo-seq
ATG

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
435328 39

TTG ...

LRA ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
626830 33

ATG ...

MTW ...

Ribo-seq
ATG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
438689 54

GTG ...

VVH ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
83345 48

GTG ...

VGA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, MEF
436930 36

ATG ...

MPS ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
437072 129

GTG ...

VGA ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
85408 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
6711 54

TTG ...

LHR ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
258952 33

CTG ...

LCC ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
269365 81

ATG ...

MAT ...

Ribo-seq
ATG

strong

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
268771 78

GTG ...

VVS ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
270942 174

GTG ...

VRM ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF
6048 69

ATG ...

MIW ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
433475 45

TTG ...

LCS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Spleen_B_cell
434443 156

CTG ...

LRA ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, E14
259231 45

CTG ...

LHR ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
437206 84

ATG ...

MWV ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
258722 48

GTG ...

VPW ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
263275 84

GTG ...

VWG ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, MEF
267956 102

TTG ...

LTA ...

Ribo-seq
TTG

weak

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF
433778 ENSMUST00000195231 Gnai2-209 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

438607 66

CTG ...

LQQ ...

Ribo-seq
CTG

weak

5 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC,
Spleen_B_cell
258103 30

TTG ...

LKK ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, R1E
922833 54

ACG ...

TCS ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
922193 105

ACG ...

THF ...

Ribo-seq
ACG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
922508 111

ATC ...

IYT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
921836 105

AAG ...

KTP ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
267956 102

TTG ...

LTA ...

Ribo-seq
TTG

weak

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC,
Spleen_B_cell
436930 36

ATG ...

MPS ...

Ribo-seq
ATG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
1073862 39

CTG ...

LTI ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil, R1E
434853 36

ATG ...

MTW ...

Ribo-seq
ATG

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, Neutrophil,
NSC, R1E
438365 51

GTG ...

VRH ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
3T3, Spleen_B_cell
922457 57

AAG ...

KIT ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
433777 69

CTG ...

LFE ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, BMDC, MEF,
NSC, R1E, Spleen_B_cell
437427 141

CTG ...

LFD ...

Ribo-seq
CTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell
923010 78

AAG ...

KNV ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
924900 150

AAG ...

KFE ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
433475 45

TTG ...

LCS ...

Ribo-seq
TTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
924288 159

ATC ...

IQS ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
438689 54

GTG ...

VVH ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC,
R1E, Spleen_B_cell
435328 39

TTG ...

LRA ...

Ribo-seq
TTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, NSC
921517 36

ATC ...

IKN ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
922275 78

AAG ...

KKD ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
434279 ENSMUST00000193835 Gnai2-207 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

85408 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, Spleen_B_cell
258722 48

GTG ...

VPW ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
261867 87

ATG ...

MKM ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14
923197 78

AGG ...

RLW ...

Ribo-seq
AGG

weak

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
437072 129

GTG ...

VGA ...

Ribo-seq
GTG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell
83345 48

GTG ...

VGA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, NSC
263275 84

GTG ...

VWG ...

Ribo-seq
GTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF,
Spleen_B_cell
1112001 36

CTG ...

LLW ...

Ribo-seq
CTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
E14, v6-5
85745 84

GTG ...

VGR ...

Ribo-seq
GTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
MEF, Neutrophil, Spleen_B_cell
438210 96

CTG ...

LSG ...

Ribo-seq
CTG

moderate

7 sORFs_org_Mouse
    Intronic
    sORF
3T3, B_cell, BMDC,
Brain, E14, Spleen_B_cell,
v6-5
438492 57

GTG ...

VQA ...

Ribo-seq
GTG

moderate

6 sORFs_org_Mouse
    Intronic
    sORF
3T3, B_cell, Brain,
E14, Spleen_B_cell, v6-5
255961 51

CTG ...

LFQ ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
B_cell
435722 138

CTG ...

LSC ...

Ribo-seq
CTG

moderate

7 sORFs_org_Mouse
    Intronic
    sORF
3T3, B_cell, BMDC,
Brain, E14, Spleen_B_cell,
v6-5
268102 96

GTG ...

VPA ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Intronic
    sORF
Brain, E14
259231 45

CTG ...

LHR ...

Ribo-seq
CTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC
922591 153

AGG ...

RQL ...

Ribo-seq
AGG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
436653 150

GTG ...

VSA ...

Ribo-seq
GTG

7 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Brain, MEF,
Neutrophil, NSC, Spleen_B_cell
436562 147

CTG ...

LFA ...

Ribo-seq
CTG

weak

7 sORFs_org_Mouse
    Intronic
    sORF
3T3, B_cell, BMDC,
Brain, E14, Spleen_B_cell,
v6-5
258952 33

CTG ...

LCC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
Brain
434443 156

CTG ...

LRA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Spleen_B_cell
269365 81

ATG ...

MAT ...

Ribo-seq
ATG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
3T3, Brain, E14
83346 ENSMUST00000192837 Gnai2-203 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

83345 48

GTG ...

VGA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
434443 156

CTG ...

LRA ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
85745 84

GTG ...

VGR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
921579 30

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
263275 84

GTG ...

VWG ...

Ribo-seq
GTG

moderate

2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, Liver
922606 84

AAG ...

KMA ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    sORF
BMDC
85408 57

GTG ...

VGR ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Testis
437072 129

GTG ...

VGA ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
259231 45

CTG ...

LHR ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Liver
255962 ENSMUST00000195762 Gnai2-210 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

261867 87

ATG ...

MKM ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
921579 30

AAG ...

KST ...

Ribo-seq
AAG

1 sORFs_org_Mouse
    Intronic
    sORF
E14
258722 48

GTG ...

VPW ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
Spleen_B_cell
269365 81

ATG ...

MAT ...

Ribo-seq
ATG

strong

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, E14,
Spleen_B_cell
268102 96

GTG ...

VPA ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Spleen_B_cell
255961 51

CTG ...

LFQ ...

Ribo-seq
CTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain
266225 39

CTG ...

LES ...

Ribo-seq
CTG

strong

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
263012 42

GTG ...

VLE ...

Ribo-seq
GTG

weak

3 sORFs_org_Mouse
    Intronic
    sORF
BMDC, Brain, Spleen_B_cell
87553 ENSMUST00000192615 Gnai2-202 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

269677 66

CTG ...

LSA ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
258952 33

CTG ...

LCC ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, R1E
87552 69

CTG ...

LST ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis, v6-5
1272224 114

ATA ...

ISA ...

Ribo-seq
ATA

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
6672 45

GTG ...

VTT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
271806 189

TTG ...

LLI ...

Ribo-seq
TTG

5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, v6-5
267956 102

TTG ...

LTA ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
433475 45

TTG ...

LCS ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
270942 174

GTG ...

VRM ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
271648 186

CTG ...

LIP ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
437072 129

GTG ...

VGA ...

Ribo-seq
GTG

strong

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
E14
626830 33

ATG ...

MTW ...

Ribo-seq
ATG

5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, NSC,
v6-5
438607 66

CTG ...

LQQ ...

Ribo-seq
CTG

weak

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
6711 54

TTG ...

LHR ...

Ribo-seq
TTG

moderate

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
263275 84

GTG ...

VWG ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
Brain
433926 87

TTG ...

LMW ...

Ribo-seq
TTG

weak

2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
438365 51

GTG ...

VRH ...

Ribo-seq
GTG

weak

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
268771 78

GTG ...

VVS ...

Ribo-seq
GTG

moderate

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
6048 69

ATG ...

MIW ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
R1E
259231 45

CTG ...

LHR ...

Ribo-seq
CTG

moderate

3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, R1E
921836 105

AAG ...

KTP ...

Ribo-seq
AAG

moderate

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
258103 30

TTG ...

LKK ...

Ribo-seq
TTG

weak

3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
268102 96

GTG ...

VPA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
438689 54

GTG ...

VVH ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
437206 84

ATG ...

MWV ...

Ribo-seq
ATG

weak

2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
436930 36

ATG ...

MPS ...

Ribo-seq
ATG

weak

3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC
83345 48

GTG ...

VGA ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
R1E
1275731 108

AGG ...

RTY ...

Ribo-seq
AGG

1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
261867 87

ATG ...

MKM ...

Ribo-seq
ATG

weak

1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
6049 ENSMUST00000193372 Gnai2-204 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

435714 60

GTG ...

VKT ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Liver,
Spleen_B_cell
437427 141

CTG ...

LFD ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
924476 66

ATC ...

IWS ...

Ribo-seq
ATC

moderate

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
433926 87

TTG ...

LMW ...

Ribo-seq
TTG

weak

8 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
435531 72

CTG ...

LRT ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, Liver, Spleen_B_cell
437206 84

ATG ...

MWV ...

Ribo-seq
ATG

weak

9 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
268771 78

GTG ...

VVS ...

Ribo-seq
GTG

moderate

9 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
434975 129

CTG ...

LND ...

Ribo-seq
CTG

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Liver,
Spleen_B_cell, v6-5
269677 66

CTG ...

LSA ...

Ribo-seq
CTG

moderate

9 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
1074222 225

GTG ...

VGG ...

Ribo-seq
GTG

1 sORFs_org_Mouse
    Intronic
    sORF
Neutrophil
6672 45

GTG ...

VTT ...

Ribo-seq
GTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Skin_tumor,
Spleen_B_cell
6418 42

GTG ...

VET ...

Ribo-seq
GTG

6 sORFs_org_Mouse
    Intronic
    sORF
E14, Liver, MEF,
Skin_tumor, Spleen_B_cell, v6-5
436139 75

GTG ...

VLR ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    Intronic
    sORF
E14, Liver, Spleen_B_cell
6048 69

ATG ...

MIW ...

Ribo-seq
ATG

weak

4 sORFs_org_Mouse
    Intronic
    sORF
E14, Skin_tumor, Spleen_B_cell,
v6-5
435328 39

TTG ...

LRA ...

Ribo-seq
TTG

moderate

5 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Liver,
Spleen_B_cell, v6-5
923031 93

ATC ...

IPT ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    Intronic
    sORF
BMDC
6711 54

TTG ...

LHR ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Skin_tumor,
Spleen_B_cell
433789 102

ATG ...

MST ...

Ribo-seq
ATG

8 sORFs_org_Mouse
    Intronic
    sORF
E14, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
434853 36

ATG ...

MTW ...

Ribo-seq
ATG

4 sORFs_org_Mouse
    Intronic
    sORF
BMDC, E14, Spleen_B_cell,
v6-5
434241 120

CTG ...

LER ...

Ribo-seq
CTG

4 sORFs_org_Mouse
    Intronic
    sORF
E14, Liver, Spleen_B_cell,
v6-5
88006 ENSMUST00000193876 Gnai2-208 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

434443 156

CTG ...

LRA ...

Ribo-seq
CTG

1 sORFs_org_Mouse
    sORF
BMDC
88005 48

GTG ...

VGA ...

Ribo-seq
GTG

4 sORFs_org_Mouse
    sORF
B_cell, BMDC, Neutrophil,
Testis
763697 75

CTG ...

LRA ...

Ribo-seq
CTG

2 sORFs_org_Mouse
    sORF
B_cell, Neutrophil
258446 ENSMUST00000193394 Gnai2-205 protein_coding
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

270942 174

GTG ...

VRM ...

Ribo-seq
GTG

3 sORFs_org_Mouse
    sORF
Neutrophil, NSC, Spleen_B_cell
6672 45

GTG ...

VTT ...

Ribo-seq
GTG

moderate

1 sORFs_org_Mouse
    sORF
Brain
258952 33

CTG ...

LCC ...

Ribo-seq
CTG

moderate

1 sORFs_org_Mouse
    sORF
MEF
6048 69

ATG ...

MIW ...

Ribo-seq
ATG

weak

1 sORFs_org_Mouse
    sORF
Brain
6711 54

TTG ...

LHR ...

Ribo-seq
TTG

moderate

1 sORFs_org_Mouse
    sORF
Brain
271648 186

CTG ...

LIP ...

Ribo-seq
CTG

3 sORFs_org_Mouse
    sORF
Neutrophil, NSC, Spleen_B_cell
925538 183

ATC ...

IPS ...

Ribo-seq
ATC

1 sORFs_org_Mouse
    sORF
BMDC
271806 189

TTG ...

LLI ...

Ribo-seq
TTG

3 sORFs_org_Mouse
    sORF
Neutrophil, NSC, Spleen_B_cell
759317 ENSMUST00000193538 Gnai2-206 retained_intron
MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

433475 45

TTG ...

LCS ...

Ribo-seq
TTG

moderate

4 sORFs_org_Mouse
    Intronic
    sORF
B_cell, MEF, Neutrophil,
NSC
436930 36

ATG ...

MPS ...

Ribo-seq
ATG

weak

6 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Liver, MEF,
Neutrophil, NSC
438365 51

GTG ...

VRH ...

Ribo-seq
GTG

weak

2 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC
761932 72

GTG ...

VQF ...

Ribo-seq
GTG

moderate

7 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Liver, MEF,
Neutrophil, NSC
759316 63

GTG ...

VFD ...

Ribo-seq
GTG

weak

7 sORFs_org_Mouse
    Intronic
    sORF
B_cell, Liver, MEF,
Neutrophil, NSC

ORFs

77 ORFs
10 known transcripts
158 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

438365 51

GTG...

VRH...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, 3T3, Spleen_B_cell,
E14, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
759317 ENSMUST00000193538 Gnai2-206 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
85745 84

GTG...

VGR...

GTG Alternative
Overlapping
sORF
Upstream
Intronic
BMDC, Testis, MEF,
Neutrophil, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
261867 87

ATG...

MKM...

ATG Alternative
InCDS
Overlapping
sORF
Intronic
Liver, BMDC, Brain,
Spleen_B_cell, 3T3, E14,
Glioma, MEF, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 1 Johnstone2016
438607 66

CTG...

LQQ...

CTG Intronic
sORF
InCDS
Overlapping
3T3, MEF, NSC,
Spleen_B_cell, Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
weak 5 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
85408 57

GTG...

VGR...

GTG Intronic
sORF
Alternative
Overlapping
Upstream
MEF, Neutrophil, Spleen_B_cell,
Testis, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
83345 48

GTG...

VGA...

GTG Alternative
Overlapping
sORF
Upstream
Intronic
Testis, MEF, Neutrophil,
NSC, BMDC, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
433926 87

TTG...

LMW...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
B_cell, BMDC, Brain,
MEF, E14, Neutrophil,
NSC, Spleen_B_cell, v6-5,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
weak 8 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
258722 48

GTG...

VPW...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
Brain, BMDC, E14,
Spleen_B_cell, Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
434443 156

CTG...

LRA...

CTG Overlapping
sORF
Upstream
Intronic
3T3, BMDC, E14,
B_cell, MEF, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
88006 ENSMUST00000193876 Gnai2-208 protein_coding Ribo-seq
1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
271648 186

CTG...

LIP...

CTG Alternative
InCDS
Overlapping
sORF
BMDC, Brain, E14,
Liver, MEF, 3T3,
v6-5, Neutrophil, NSC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
269677 66

CTG...

LSA...

CTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, Brain, E14,
BMDC, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
moderate 9 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
258952 33

CTG...

LCC...

CTG InCDS
Overlapping
sORF
Intronic
Brain, Liver, R1E,
MEF, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
87552 69

CTG...

LST...

CTG Alternative
InCDS
Overlapping
sORF
Testis, v6-5, B_cell,
BMDC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
2 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
258103 30

TTG...

LKK...

TTG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, MEF, R1E,
Brain, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
435714 60

GTG...

VKT...

GTG Intronic
sORF
BMDC, E14, Liver,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
4 sORFs_org_Mouse
923197 78

AGG...

RLW...

AGG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
weak 1 sORFs_org_Mouse
437427 141

CTG...

LFD...

CTG Intronic
sORF
BMDC, 3T3, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
437072 129

GTG...

VGA...

GTG Intronic
sORF
Overlapping
Upstream
B_cell, MEF, Neutrophil,
Spleen_B_cell, E14, BMDC,
3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
924476 66

ATC...

IWS...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
1272224 114

ATA...

ISA...

ATA Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
6672 45

GTG...

VTT...

GTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, BMDC, Brain,
MEF, E14, Skin_tumor,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
922833 54

ACG...

TCS...

ACG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
271806 189

TTG...

LLI...

TTG Alternative
InCDS
Overlapping
sORF
3T3, BMDC, Brain,
E14, v6-5, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
5 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
922193 105

ACG...

THF...

ACG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
922508 111

ATC...

IYT...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
267956 102

TTG...

LTA...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
Brain, E14, 3T3,
MEF, NSC, Spleen_B_cell,
B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
weak 6 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
263275 84

GTG...

VWG...

GTG Intronic
sORF
Overlapping
Upstream
B_cell, Brain, MEF,
Spleen_B_cell, 3T3, Liver,
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
270942 174

GTG...

VRM...

GTG sORF
Alternative
InCDS
Overlapping
Neutrophil, NSC, Spleen_B_cell,
3T3, Brain, E14,
v6-5, BMDC, Liver,
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
3 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
4 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
4 sORFs_org_Mouse
1112001 36

CTG...

LLW...

CTG Intronic
sORF
E14, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
433475 45

TTG...

LCS...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, B_cell, MEF,
Neutrophil, NSC, BMDC,
Brain, E14, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
759317 ENSMUST00000193538 Gnai2-206 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 4 sORFs_org_Mouse
433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
435531 72

CTG...

LRT...

CTG Intronic
sORF
E14, Liver, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
437206 84

ATG...

MWV...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5, 3T3, Glioma,
Liver, MESC, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
weak 9 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
Johnstone2016
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
268771 78

GTG...

VVS...

GTG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5, 3T3, Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
moderate 9 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
921579 30

AAG...

KST...

AAG Alternative
InCDS
Overlapping
sORF
Intronic
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
1 sORFs_org_Mouse
434975 129

CTG...

LND...

CTG Intronic
sORF
BMDC, E14, Liver,
Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
5 sORFs_org_Mouse
921836 105

AAG...

KTP...

AAG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
438210 96

CTG...

LSG...

CTG Intronic
sORF
3T3, B_cell, BMDC,
Brain, E14, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 7 sORFs_org_Mouse
438492 57

GTG...

VQA...

GTG Intronic
sORF
3T3, B_cell, Brain,
E14, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
626830 33

ATG...

MTW...

ATG Alternative
InCDS
Overlapping
sORF
3T3, Glioma, Liver,
MEF, MESC, NSC,
v6-5, B_cell, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
5 sORFs_org_Mouse
Johnstone2016
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
5 sORFs_org_Mouse
436930 36

ATG...

MPS...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, Spleen_B_cell, B_cell,
Liver, MEF, Neutrophil,
NSC, 3T3, E14,
Glioma, MESC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 2 sORFs_org_Mouse
759317 ENSMUST00000193538 Gnai2-206 retained_intron Ribo-seq
weak 6 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
Johnstone2016
1074222 225

GTG...

VGG...

GTG Intronic
sORF
Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
88005 48

GTG...

VGA...

GTG sORF
B_cell, BMDC, Neutrophil,
Testis
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88006 ENSMUST00000193876 Gnai2-208 protein_coding Ribo-seq
4 sORFs_org_Mouse
1073862 39

CTG...

LTI...

CTG Intronic
sORF
Neutrophil, R1E
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
434853 36

ATG...

MTW...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
3T3, MEF, Neutrophil,
NSC, R1E, B_cell,
BMDC, E14, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
6 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
3 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
4 sORFs_org_Mouse
6711 54

TTG...

LHR...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
3T3, R1E, Brain,
BMDC, MEF, E14,
Skin_tumor, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
1693309 51

CTG...

LWP...

CTG Alternative
Downstream
Overlapping
sORF
MEF
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
1 sORFs_org_Mouse
269365 81

ATG...

MAT...

ATG Intronic
sORF
Alternative
InCDS
Overlapping
BMDC, Brain, E14,
Spleen_B_cell, Liver, 3T3
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
strong 4 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
strong 1 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
6048 69

ATG...

MIW...

ATG sORF
Intronic
Alternative
InCDS
Overlapping
Brain, E14, Skin_tumor,
Spleen_B_cell, v6-5, 3T3,
Glioma, Liver, MEF,
MESC, R1E, BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
weak 1 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
weak 4 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
weak 4 sORFs_org_Mouse
Johnstone2016
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
weak 3 sORFs_org_Mouse
435328 39

TTG...

LRA...

TTG Alternative
InCDS
Overlapping
sORF
Intronic
BMDC, Brain, E14,
Liver, Spleen_B_cell, v6-5,
3T3, MEF, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 2 sORFs_org_Mouse
6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
moderate 5 sORFs_org_Mouse
433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
6418 42

GTG...

VET...

GTG Intronic
sORF
E14, Liver, MEF,
Skin_tumor, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
6 sORFs_org_Mouse
922606 84

AAG...

KMA...

AAG sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
1 sORFs_org_Mouse
438689 54

GTG...

VVH...

GTG InCDS
Overlapping
sORF
Intronic
Brain, E14, 3T3,
MEF, NSC, R1E,
Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
763697 75

CTG...

LRA...

CTG sORF
B_cell, Neutrophil
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

88006 ENSMUST00000193876 Gnai2-208 protein_coding Ribo-seq
2 sORFs_org_Mouse
268102 96

GTG...

VPA...

GTG Intronic
sORF
InCDS
Overlapping
BMDC, E14, Spleen_B_cell,
Brain
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
moderate 3 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 2 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
436139 75

GTG...

VLR...

GTG Intronic
sORF
E14, Liver, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
3 sORFs_org_Mouse
255961 51

CTG...

LFQ...

CTG Intronic
sORF
BMDC, Brain, B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
weak 2 sORFs_org_Mouse
434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
1 sORFs_org_Mouse
922457 57

AAG...

KIT...

AAG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
266225 39

CTG...

LES...

CTG Intronic
sORF
BMDC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
strong 3 sORFs_org_Mouse
435722 138

CTG...

LSC...

CTG Intronic
sORF
3T3, B_cell, BMDC,
Brain, E14, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 7 sORFs_org_Mouse
259231 45

CTG...

LHR...

CTG Intronic
sORF
InCDS
Overlapping
MEF, NSC, Brain,
E14, R1E, 3T3,
Liver
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 4 sORFs_org_Mouse
87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
433476 ENSMUST00000055704 Gnai2-201 protein_coding Ribo-seq
moderate 1 sORFs_org_Mouse
83346 ENSMUST00000192837 Gnai2-203 protein_coding Ribo-seq
moderate 3 sORFs_org_Mouse
433777 69

CTG...

LFE...

CTG Intronic
sORF
3T3, BMDC, MEF,
NSC, R1E, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
moderate 6 sORFs_org_Mouse
922591 153

AGG...

RQL...

AGG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse
923031 93

ATC...

IPT...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
1 sORFs_org_Mouse
436653 150

GTG...

VSA...

GTG Intronic
sORF
B_cell, Brain, MEF,
Neutrophil, NSC, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
7 sORFs_org_Mouse
436562 147

CTG...

LFA...

CTG Intronic
sORF
3T3, B_cell, BMDC,
Brain, E14, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

434279 ENSMUST00000193835 Gnai2-207 retained_intron Ribo-seq
weak 7 sORFs_org_Mouse
433789 102

ATG...

MST...

ATG Intronic
sORF
E14, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
8 sORFs_org_Mouse
923010 78

AAG...

KNV...

AAG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
924900 150

AAG...

KFE...

AAG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
761932 72

GTG...

VQF...

GTG Intronic
sORF
B_cell, Liver, MEF,
Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

759317 ENSMUST00000193538 Gnai2-206 retained_intron Ribo-seq
moderate 7 sORFs_org_Mouse
925538 183

ATC...

IPS...

ATC sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

258446 ENSMUST00000193394 Gnai2-205 protein_coding Ribo-seq
1 sORFs_org_Mouse
924288 159

ATC...

IQS...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
434241 120

CTG...

LER...

CTG Intronic
sORF
E14, Liver, Spleen_B_cell,
v6-5
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

6049 ENSMUST00000193372 Gnai2-204 retained_intron Ribo-seq
4 sORFs_org_Mouse
759316 63

GTG...

VFD...

GTG Intronic
sORF
B_cell, Liver, MEF,
Neutrophil, NSC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

759317 ENSMUST00000193538 Gnai2-206 retained_intron Ribo-seq
weak 7 sORFs_org_Mouse
1275731 108

AGG...

RTY...

AGG Alternative
InCDS
Overlapping
sORF
E14
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

87553 ENSMUST00000192615 Gnai2-202 protein_coding Ribo-seq
1 sORFs_org_Mouse
263012 42

GTG...

VLE...

GTG Intronic
sORF
BMDC, Brain, Spleen_B_cell
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

255962 ENSMUST00000195762 Gnai2-210 retained_intron Ribo-seq
weak 3 sORFs_org_Mouse
921517 36

ATC...

IKN...

ATC Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
1 sORFs_org_Mouse
922275 78

AAG...

KKD...

AAG Intronic
sORF
BMDC
MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

433778 ENSMUST00000195231 Gnai2-209 retained_intron Ribo-seq
moderate 1 sORFs_org_Mouse

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5