Transcript 492454

Transcript

ID CARD

MetamORF ID

492454

ENSMUST00000193675

Name

Vim-206

Strand

Biotype

protein_coding

Start-end positions

13574281-13582825

CDS Start-stop positions

13574432-13582483

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

NCBI:22352

Aliases

ENSMUSG00000026728,
MGI:98932, NCBI:22352, OFF:Vim,
Vim

Chr 2

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
970477	177	AGG ...	RSQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
45254	48	GTG ...	VAP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1216380	186	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
47219	141	TTG ...	LLQ ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, NSC
16588	279	CTG ...	LPR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell
412214	147	ATT ...	IPL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
15306	75	TTG ...	LTM ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
498026	147	ATG ...	MWT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell
970716	255	AGG ...	RNG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
976846	39	ATC ...	INE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
968843	120	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
976907	81	AGG ...	RML ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
103422	36	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
47758	231	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
47460	93	ATG ...	MPC ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
95356	51	TTG ...	LTL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
49391	204	TTG ...	LLR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil
48208	225	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1878340	102	ATG ...	MLR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
15240	78	ATG ...	MLT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
412896	132	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
16209	216	CTG ...	LPT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
412472	45	TTG ...	LNG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
966535	126	ACG ...	TRR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
15484	159	ATG ...	MSR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell
15297	84	GTG ...	VRW ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil
1054543	66	TTG ...	LPL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
16181	231	CTG ...	LTS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
964709	90	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1052567	54	CTG ...	LLT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
44315	111	CTG ...	LPT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
15804	69	ATG ...	MLL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
46279	234	TTG ...	LPT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
46554	81	CTG ...	LCP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Neutrophil
498527	129	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
1053340	60	TTG ...	LKL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, v6-5
976836	75	AAG ...	KTR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1207308	168	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
46932	243	ATG ...	MTA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC
16425	234	TTG ...	LLT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
970873	153	AGG ...	RCS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
15548	177	CTG ...	LSS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
47025	213	CTG ...	LPL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil
965759	78	ACG ...	TTR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
49125	126	CTG ...	LTS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
968597	189	AGG ...	RSC ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
48339	117	CTG ...	LRL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1212030	141	ACG ...	TFP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
16265	222	CTG ...	LRL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
970967	168	ACG ...	TST ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
50636	198	ATG ...	MPC ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
970621	261	AGG ...	RPR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1462457	123	GTG ...	VNT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
16548	291	ATG ...	MKA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell
968503	33	AAG ...	KHP ...	Ribo-seq	AAG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
497959	66	GTG ...	VSR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
969993	180	AGG ...	RPR ...	Ribo-seq	AGG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF
48077	138	TTG ...	LQF ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Neutrophil, NSC
412857	114	AGG ...	RKP ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
47295	129	TTG ...	LLT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
971498	135	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
49725	135	GTG ...	VKW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5

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