Transcript 586340

Transcript

ID CARD

MetamORF ID

586340

ENSMUST00000187103

Name

Tuba4a-205

Strand

Biotype

retained_intron

Start-end positions

75216435-75219243

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:22145

Aliases

ENSMUSG00000026202,
M[a]4, MGI:1095410, NCBI:22145,
OFF:Tuba4a, Tuba4, Tuba4a

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
994735	255	CTG ...	LEH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
180580	48	GTG ...	VTP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil
477062	96	GTG ...	VEG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
856678	39	TTG ...	LEG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
448604	126	ATG ...	MGR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
10381	57	CTG ...	LEL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
322011	87	ATG ...	MQP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
470150	96	GTG ...	VHR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
294567	153	ATG ...	MRS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
9460	63	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
455038	141	ATG ...	MGF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
997276	108	CTG ...	LYP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
661449	165	ATG ...	MVF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
997406	264	TTG ...	LWV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
474532	66	GTG ...	VVI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
404308	36	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
346462	141	ATG ...	MAH ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
452663	129	CTG ...	LMG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1035951	243	GTG ...	VTF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
468683	99	TTG ...	LVE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
364563	51	TTG ...	LAR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
467213	72	ATG ...	MPV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
332649	99	CTG ...	LGK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

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