Transcript 8168 | MetamORF

Transcript

ID CARD

MetamORF ID

8168

ENSMUST00000172186

Name

Srsf1-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

88048589-88051122

CDS Start-stop positions

-88050015

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:110809

Aliases

1110054N12Rik,
5730507C05Rik, 6330415C05Rik, AI482334,
Asf, AW491331, ENSMUSG00000018379,
MGI:98283, NCBI:110809, OFF:Srsf1,
Sf2, Sfrs1, Srsf1

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19666	72	GTG ...	VMY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
18476	54	ATG ...	MFT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
975342	72	AAG ...	KQQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
20058	69	ATG ...	MYV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF
1289705	36	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1292618	63	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
8783	48	ATG ...	MQF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Skin_tumor
20842	267	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
1287204	84	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
1290972	33	AAG ...	KLW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1287477	30	ATA ...	ITL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	E14
91763	243	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
1283995	42	ACG ...	TER ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
90790	33	GTG ...	VSW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF
17399	42	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
17305	246	TTG ...	LMG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
21476	57	CTG ...	LMF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
20717	81	GTG ...	VRQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, MEF
20140	54	ATG ...	MAR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
17647	222	ATG ...	MED ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
1289744	39	AAG ...	KSK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
21790	36	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
8227	225	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, Skin_tumor
1291845	180	ATC ...	IRV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
1285766	90	ATC ...	ITC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
8825	129	GTG ...	VEF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Skin_tumor
8167	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	NMD sORF	E14, MEF, Skin_tumor

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