Gene NCBI:110809 | MetamORF

Gene

ID CARD

NCBI:110809

Aliases

1110054N12Rik
5730507C05Rik, 6330415C05Rik, AI482334
Asf, AW491331, ENSMUSG00000018379
MGI:98283, NCBI:110809, OFF:Srsf1
Sf2, Sfrs1, Srsf1

Chromosome

Transcripts

58 ORFs
7 known transcripts
136 ORF to known transcript associations

MetamORF
transcript ID

The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.

Transcript ID

The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).

Transcript name

The transcript name (e.g. MDK-202).

Transcript biotype

The biotype of the transcript (as defined by Ensembl).

ORFs

Display all the transcripts related to the entry.

17306

ENSMUST00000079866

Srsf1-201

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
18476	54	ATG ...	MFT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
21683	54	ATG ...	MRC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, Testis
20842	267	CTG ...	LPT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E, Testis
8167	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
445850	33	GTG ...	VPL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, R1E
91763	243	ATG ...	MGP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E, Testis
17647	222	ATG ...	MED ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E, Testis
936285	150	ACG ...	TLG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
20140	54	ATG ...	MAR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
975422	66	ATA ...	ISE ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
8783	48	ATG ...	MQF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
1285308	57	AGG ...	RWC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1291598	63	ACG ...	TRK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1296012	159	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
21790	36	CTG ...	LVS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
21476	57	CTG ...	LMF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
19708	84	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
20717	81	GTG ...	VRQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
9288	84	TTG ...	LSS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, Testis
447287	141	TTG ...	LVG ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, R1E
771294	111	CTG ...	LPY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
1284574	114	AAG ...	KRP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
90790	33	GTG ...	VSW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
19394	36	GTG ...	VVP ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF Upstream	B_cell, E14, R1E, Testis
975342	72	AAG ...	KQQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
19666	72	GTG ...	VMY ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
17305	246	TTG ...	LMG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream sORF	Brain, R1E, Testis
1284787	36	ACG ...	TAT ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
20058	69	ATG ...	MYV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
17399	42	ATG ...	MAL ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Testis
20756	120	GTG ...	VAR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, Testis
1285737	45	ACG ...	TVA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

9289

ENSMUST00000107920

Srsf1-202

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
17305	246	TTG ...	LMG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
18476	54	ATG ...	MFT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
91763	243	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
17647	222	ATG ...	MED ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
21476	57	CTG ...	LMF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
21683	54	ATG ...	MRC ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
20842	267	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
20756	120	GTG ...	VAR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, v6-5
19666	72	GTG ...	VMY ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
8167	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
20717	81	GTG ...	VRQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
9288	84	TTG ...	LSS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, Skin_tumor, v6-5
8783	48	ATG ...	MQF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
20058	69	ATG ...	MYV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC

7916

ENSMUST00000171976

Srsf1-206

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21683	54	ATG ...	MRC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
975422	66	ATA ...	ISE ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
19394	36	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
299826	141	GTG ...	VGN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF
297269	183	GTG ...	VIR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF
7915	60	CTG ...	LKN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, Skin_tumor
20756	120	GTG ...	VAR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF
975378	147	ATC ...	IYV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	MEF
297078	96	GTG ...	VFY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF
445850	33	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF

639989

ENSMUST00000134824

Srsf1-204

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8227	225	CTG ...	LPP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
17399	42	ATG ...	MAL ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
20717	81	GTG ...	VRQ ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	NMD sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, v6-5
19666	72	GTG ...	VMY ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
8825	129	GTG ...	VEF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, v6-5
20842	267	CTG ...	LPT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
90790	33	GTG ...	VSW ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
17647	222	ATG ...	MED ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
19708	84	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, NSC, v6-5
20058	69	ATG ...	MYV ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
21790	36	CTG ...	LVS ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
1122485	78	ATG ...	MIG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
8167	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
1124100	84	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
17305	246	TTG ...	LMG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
20140	54	ATG ...	MAR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
91763	243	ATG ...	MGP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
8783	48	ATG ...	MQF ...	Ribo-seq	ATG		8	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
21476	57	CTG ...	LMF ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
18476	54	ATG ...	MFT ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5

294354

ENSMUST00000139129

Srsf1-205

protein_coding

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19666	72	GTG ...	VMY ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
454248	216	CTG ...	LIK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Spleen_B_cell
17399	42	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
447287	141	TTG ...	LVG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Spleen_B_cell
453403	60	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
17647	222	ATG ...	MED ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Spleen_B_cell
20058	69	ATG ...	MYV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
294855	33	TTG ...	LER ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
21790	36	CTG ...	LVS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
19394	36	GTG ...	VVP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	BMDC, Spleen_B_cell
445850	33	GTG ...	VPL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Spleen_B_cell
91763	243	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Spleen_B_cell
932653	99	AGG ...	RLG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
20717	81	GTG ...	VRQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
8783	48	ATG ...	MQF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
8167	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
9288	84	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, Spleen_B_cell
936285	150	ACG ...	TLG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
934518	54	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
90790	33	GTG ...	VSW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
20140	54	ATG ...	MAR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
20842	267	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Spleen_B_cell
20756	120	GTG ...	VAR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, Spleen_B_cell
18476	54	ATG ...	MFT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
21476	57	CTG ...	LMF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
930920	117	ATT ...	ILP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
19708	84	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
17305	246	TTG ...	LMG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Spleen_B_cell
934756	87	AAG ...	KAS ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
21683	54	ATG ...	MRC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell

8168

ENSMUST00000172186

Srsf1-207

nonsense_mediated_decay

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19666	72	GTG ...	VMY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
18476	54	ATG ...	MFT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
975342	72	AAG ...	KQQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
20058	69	ATG ...	MYV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF
1289705	36	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1292618	63	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
8783	48	ATG ...	MQF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Skin_tumor
20842	267	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
1287204	84	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
1290972	33	AAG ...	KLW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1287477	30	ATA ...	ITL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	E14
91763	243	ATG ...	MGP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
1283995	42	ACG ...	TER ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
90790	33	GTG ...	VSW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF
17399	42	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
17305	246	TTG ...	LMG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
21476	57	CTG ...	LMF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, MEF
20717	81	GTG ...	VRQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, MEF
20140	54	ATG ...	MAR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
17647	222	ATG ...	MED ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
1289744	39	AAG ...	KSK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
21790	36	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
8227	225	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, Skin_tumor
1291845	180	ATC ...	IRV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
1285766	90	ATC ...	ITC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
8825	129	GTG ...	VEF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Skin_tumor
8167	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	NMD sORF	E14, MEF, Skin_tumor

308133

ENSMUST00000132983

Srsf1-203

retained_intron

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
17647	222	ATG ...	MED ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
308194	33	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
17305	246	TTG ...	LMG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12

3008748

UNKNOWN_TRANSCRIPT

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF length The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91763	243	ATG ...	MGP ...	Predicted	ATG		1	Samandi2017	sORF

ORFs

58 ORFs
7 known transcripts
136 ORF to known transcript associations

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF Length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Start codon

The start codon sequence of the ORF.

ORF annotations

A comma-separated list of all the annotations computed by our algorithm for the ORF. This list includes the annotations computed for the ORF for all transcripts. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of all the cell types in which the ORF has already been identified.

Transcripts

Display all the transcripts related to the entry.

18476

ATG...

MFT...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, R1E, Testis,
B_cell, E14, BMDC,
Spleen_B_cell, 3T3, MEF,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	weak	9	sORFs_org_Mouse

17305

246

TTG...

LMG...

TTG

Alternative
InCDS
Overlapping
sORF
NMD
Downstream
Intronic

B_cell, Brain, E14,
MEF, NSC, v6-5,
R1E, Testis, BMDC,
Spleen_B_cell, C2C12

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
308133	ENSMUST00000132983	Srsf1-203	retained_intron	Ribo-seq	moderate	1	sORFs_org_Mouse

21683

ATG...

MRC...

ATG

Alternative
InCDS
Overlapping
sORF
Intronic

Brain, E14, R1E,
Testis, 3T3, MEF,
B_cell, Glioma, Liver,
MESC, NSC, v6-5,
BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	moderate	7	sORFs_org_Mouse Johnstone2016
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

8227

225

CTG...

LPP...

CTG

NMD
sORF

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse

91763

243

ATG...

MGP...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
NMD

B_cell, Brain, R1E,
Testis, E14, Spleen_B_cell,
MEF, NSC,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
3008748	UNKNOWN_TRANSCRIPT			Predicted		1	Samandi2017
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse

20842

267

CTG...

LPT...

CTG

Alternative
Downstream
sORF
InCDS
Overlapping
NMD

Brain, R1E, Testis,
B_cell, E14, 3T3,
MEF, Neutrophil, NSC,
v6-5, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

8167

CTG...

LAG...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, R1E, B_cell,
3T3, E14, MEF,
Neutrophil, NSC, v6-5,
BMDC, Spleen_B_cell, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	strong	7	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq	strong	3	sORFs_org_Mouse

17399

ATG...

MAL...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
BMDC, Spleen_B_cell, Brain,
R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	strong	9	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse

975422

ATA...

ISE...

ATA

Intronic
sORF
Alternative
InCDS
Overlapping

MEF, E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

19394

GTG...

VVP...

GTG

Intronic
sORF
Upstream

3T3, BMDC, Spleen_B_cell,
B_cell, E14, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

19666

GTG...

VMY...

GTG

Alternative
InCDS
Overlapping
sORF
NMD

BMDC, Brain, Spleen_B_cell,
MEF, 3T3, E14,
Neutrophil, NSC, v6-5,
B_cell, R1E, Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	weak	8	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse

445850

GTG...

VPL...

GTG

sORF
Upstream
Intronic

B_cell, MEF, R1E,
3T3, BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse

20717

GTG...

VRQ...

GTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, E14, Liver,
MEF, Neutrophil, NSC,
v6-5, B_cell, Brain,
R1E, Testis, BMDC,
Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	weak	9	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	4	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse

975342

AAG...

KQQ...

AAG

NMD
sORF
Downstream

E14, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

17647

222

ATG...

MED...

ATG

Alternative
InCDS
Overlapping
sORF
Downstream
Intronic
NMD

B_cell, Brain, R1E,
Testis, Spleen_B_cell, E14,
MEF, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
308133	ENSMUST00000132983	Srsf1-203	retained_intron	Ribo-seq	strong	1	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		5	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

20058

ATG...

MYV...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, E14, MEF,
3T3, Neutrophil, NSC,
v6-5, BMDC, Spleen_B_cell,
R1E, Testis, B_cell,
Glioma, Liver, MESC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	moderate	8	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse Johnstone2016

1289705

AAG...

KQR...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

454248

216

CTG...

LIK...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell, Brain, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	3	sORFs_org_Mouse

1292618

AGG...

RRS...

AGG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

299826

141

GTG...

VGN...

GTG

Intronic
sORF

Brain, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		5	sORFs_org_Mouse

21476

CTG...

LMF...

CTG

Alternative
InCDS
Overlapping
sORF
NMD

B_cell, Brain, R1E,
Testis, MEF, BMDC,
Spleen_B_cell, 3T3, E14,
Neutrophil, NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		2	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	2	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	moderate	8	sORFs_org_Mouse

8825

129

GTG...

VEF...

GTG

NMD
sORF

E14, MEF, Neutrophil,
NSC, v6-5, Brain,
Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse

447287

141

TTG...

LVG...

TTG

Alternative
Overlapping
sORF
Upstream

BMDC, Spleen_B_cell, B_cell,
Brain, E14, R1E

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	4	sORFs_org_Mouse

936285

150

ACG...

TLG...

ACG

Alternative
Overlapping
sORF
Upstream

E14, BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

8783

ATG...

MQF...

ATG

NMD
sORF
Alternative
InCDS
Overlapping

Brain, E14, MEF,
Skin_tumor, R1E, BMDC,
Liver, Spleen_B_cell, 3T3,
Neutrophil, NSC, v6-5,
B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq		3	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		8	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq		1	sORFs_org_Mouse

20756

120

GTG...

VAR...

GTG

Alternative
InCDS
Overlapping
sORF
Intronic

B_cell, E14, MEF,
Neutrophil, v6-5, 3T3,
Brain, Liver, BMDC,
C2C12, Spleen_B_cell, R1E,
Testis

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq	moderate	6	sORFs_org_Mouse
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq	moderate	5	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	4	sORFs_org_Mouse

1287204

AGG...

RSR...

AGG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1290972

AAG...

KLW...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

20140

ATG...

MAR...

ATG

Alternative
InCDS
Overlapping
sORF
NMD

Brain, R1E, Testis,
Liver, Spleen_B_cell, 3T3,
E14, MEF, Neutrophil,
NSC, v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq		2	sORFs_org_Mouse
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		7	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

453403

GTG...

VRR...

GTG

Alternative
sORF
Upstream

B_cell, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1287477

ATA...

ITL...

ATA

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

90790

GTG...

VSW...

GTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, R1E, Testis,
BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	weak	8	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		3	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	weak	3	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	2	sORFs_org_Mouse

1283995

ACG...

TER...

ACG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

19708

GTG...

VEA...

GTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, E14, NSC,
v6-5, Brain, R1E,
Testis, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		4	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq		3	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq		1	sORFs_org_Mouse

21790

CTG...

LVS...

CTG

NMD
sORF
Alternative
InCDS
Overlapping

3T3, E14, MEF,
Neutrophil, NSC, v6-5,
Brain, R1E, Testis,
BMDC, Spleen_B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq	strong	9	sORFs_org_Mouse
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	3	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	2	sORFs_org_Mouse
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1285308

AGG...

RWC...

AGG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1122485

ATG...

MIG...

ATG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1291598

ACG...

TRK...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1296012

159

AAG...

KRP...

AAG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

297269

183

GTG...

VIR...

GTG

Intronic
sORF

Brain, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		5	sORFs_org_Mouse

294855

TTG...

LER...

TTG

Alternative
sORF
Upstream

B_cell, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	11	sORFs_org_Mouse

1124100

CTG...

LDN...

CTG

NMD
sORF

v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
639989	ENSMUST00000134824	Srsf1-204	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

7915

CTG...

LKN...

CTG

Intronic
sORF

3T3, Brain, Liver,
MEF, Skin_tumor

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		6	sORFs_org_Mouse

932653

AGG...

RLG...

AGG

Alternative
Overlapping
sORF
Upstream

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

9288

TTG...

LSS...

TTG

Alternative
InCDS
Overlapping
sORF

3T3, Brain, E14,
Liver, R1E, Testis,
BMDC, Spleen_B_cell, B_cell,
MEF, NSC, Skin_tumor,
v6-5

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq		7	sORFs_org_Mouse
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq		4	sORFs_org_Mouse
9289	ENSMUST00000107920	Srsf1-202	protein_coding	Ribo-seq		9	sORFs_org_Mouse

308194

CTG...

LKR...

CTG

Intronic
sORF

Brain

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
308133	ENSMUST00000132983	Srsf1-203	retained_intron	Ribo-seq	weak	1	sORFs_org_Mouse

771294

111

CTG...

LPY...

CTG

Alternative
Overlapping
sORF
Upstream

B_cell

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

934518

AGG...

RTS...

AGG

Alternative
InCDS
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	weak	1	sORFs_org_Mouse

1284574

114

AAG...

KRP...

AAG

InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq		1	sORFs_org_Mouse

975378

147

ATC...

IYV...

ATC

Intronic
sORF

MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		1	sORFs_org_Mouse

297078

GTG...

VFY...

GTG

Intronic
sORF

Brain, Liver, MEF

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
7916	ENSMUST00000171976	Srsf1-206	retained_intron	Ribo-seq		4	sORFs_org_Mouse

1289744

AAG...

KSK...

AAG

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1284787

ACG...

TAT...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

930920

117

ATT...

ILP...

ATT

Alternative
Downstream
Overlapping
sORF

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1285737

ACG...

TVA...

ACG

Alternative
InCDS
Overlapping
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
17306	ENSMUST00000079866	Srsf1-201	protein_coding	Ribo-seq	moderate	1	sORFs_org_Mouse

1291845

180

ATC...

IRV...

ATC

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

1285766

ATC...

ITC...

ATC

NMD
sORF

E14

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
8168	ENSMUST00000172186	Srsf1-207	nonsense_mediated_decay	Ribo-seq		1	sORFs_org_Mouse

934756

AAG...

KAS...

AAG

Alternative
Overlapping
sORF
Upstream

BMDC

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript name The transcript name (e.g. MDK-202).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.
294354	ENSMUST00000139129	Srsf1-205	protein_coding	Ribo-seq	strong	1	sORFs_org_Mouse

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