Transcript 1743 | MetamORF

Transcript

ID CARD

MetamORF ID

1743

ENSMUST00000171419

Name

Actb-208

Strand

Biotype

protein_coding

Start-end positions

142904351-142905821

CDS Start-stop positions

-142905686

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:11461

Aliases

Actb,
Actx, beta-actin, E430023M04Rik,
ENSMUSG00000029580, MGI:87904, NCBI:11461,
OFF:Actb

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1838	147	TTG ...	LCL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	Liver, MEF, Skin_tumor, Testis
1987	123	ATG ...	MTI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	E14, Liver, MEF, Skin_tumor, Testis
180584	75	GTG ...	VLC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	BMDC, MEF
903546	75	AAG ...	KPA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
2298	69	GTG ...	VQS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF	Liver, MEF, Skin_tumor, Testis
1742	54	ATG ...	MLP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	Liver, MEF, Skin_tumor, Testis
2515	114	CTG ...	LRW ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	C2C12, E14, Liver, MEF, Skin_tumor, Testis
64025	33	GTG ...	VTR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	sORF	E14, Liver, MEF, Testis
2387	57	ATG ...	MLP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	Liver, MEF, Skin_tumor, Testis
521142	33	TTG ...	LRP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF	Liver, MEF
906110	96	ACG ...	TAP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
2526	126	ATG ...	MTI ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF	C2C12, E14, Liver, MEF, Skin_tumor, Testis
2087	39	ATG ...	MWV ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	sORF	Liver, MEF, Skin_tumor, Testis
2487	45	CTG ...	LYS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	E14, Liver, MEF, Skin_tumor, Testis
903735	57	ACG ...	TML ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
65027	42	CTG ...	LYS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	E14, Liver, MEF, Testis
906071	60	ACG ...	TML ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
517903	30	ATG ...	MPL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
2356	111	CTG ...	LRW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	E14, Liver, MEF, Skin_tumor, Testis
2538	150	TTG ...	LCL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	Liver, MEF, Skin_tumor, Testis
977624	78	AAG ...	KPA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
414922	120	ATA ...	ISL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	sORF	C2C12, Liver
903632	93	ACG ...	TAP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14

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