Transcript 25119 | MetamORF

Transcript

ID CARD

MetamORF ID

25119

ENSMUST00000162952

Name

Wars-207

Strand

Biotype

retained_intron

Start-end positions

108865871-108875281

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:22375

Aliases

ENSMUSG00000021266,
MGI:104630, NCBI:22375, OFF:Wars,
TrpRS, Wars, Wars1,
WRS

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
321185	90	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
328453	126	CTG ...	LWK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
779454	99	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1297199	30	TTG ...	LSI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
325647	39	CTG ...	LWL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1296843	165	AGG ...	RNV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
25118	159	TTG ...	LVI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1298267	153	ATC ...	IQM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1296957	156	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
9939	33	CTG ...	LTT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
25933	165	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1298992	120	AAG ...	KDL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
326190	114	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
326124	108	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain

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