Transcript 24131 | MetamORF

Transcript

ID CARD

MetamORF ID

24131

ENSMUST00000153209

Name

Cdc42se2-205

Strand

Biotype

protein_coding

Start-end positions

54723574-54787646

CDS Start-stop positions

-54740291

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:72729

Aliases

2810404F18Rik,
AA408783, AA536669, Cdc42se2,
ENSMUSG00000052298, MGI:1919979, NCBI:72729,
OFF:Cdc42se2, SPEC2

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
20124	45	CTG ...	LCV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF, NSC
21114	147	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	E14, MEF, v6-5
17418	144	CTG ...	LPS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF	E14, MEF, v6-5
312816	162	ATG ...	MNV ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	Brain, E14, MEF, R1E, v6-5
17868	69	ATG ...	MLM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	Brain, MEF, NSC, v6-5
23537	201	CTG ...	LEA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	3T3, C2C12, Liver, MEF, Neutrophil
20491	39	GTG ...	VSF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	MEF, NSC
312330	135	CTG ...	LNQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	E14, MEF, v6-5
299771	93	GTG ...	VSV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	3T3, E14, MEF, v6-5
23543	165	CTG ...	LEQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, Liver, MEF, Neutrophil
1761687	174	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, R1E
91533	63	ATG ...	MSL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	Brain, MEF, NSC, v6-5
453853	57	GTG ...	VKQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
310479	36	TTG ...	LRH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
24130	210	GTG ...	VEI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, MEF, Neutrophil, Testis
19263	123	TTG ...	LSE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	3T3, Brain, MEF, NSC
21860	126	GTG ...	VLS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	3T3, Brain, MEF, NSC
91481	57	CTG ...	LKS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	MEF, NSC, v6-5
293615	63	TTG ...	LWS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
1760557	177	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, R1E
301298	54	GTG ...	VNS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	Brain, E14, NSC, v6-5
419758	138	ACG ...	TIG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	C2C12
308436	51	CTG ...	LSE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain
21216	102	CTG ...	LEP ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF	3T3, E14, MEF, v6-5

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