Transcript 332450

Transcript

ID CARD

MetamORF ID

332450

ENSMUST00000150825

Name

Hnrnpu-204

Strand

Biotype

retained_intron

Start-end positions

178331866-178332926

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:51810

Aliases

AA408410,
AI256620, AL024194, AL024437,
AW557595, C86794, ENSMUSG00000039630,
hnRNP U, Hnrnpu, Hnrpu,
MGI:1858195, NCBI:51810, OFF:Hnrnpu,
SAFA, Sp120

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
23803	87	GTG ...	VQL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
83794	204	CTG ...	LMK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
8513	210	TTG ...	LKL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
40127	129	TTG ...	LLT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
13034	42	CTG ...	LYF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
34972	105	ATG ...	MFS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
34781	159	GTG ...	VLP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
39801	156	TTG ...	LPL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
26287	183	ATG ...	MRR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1450301	81	GTG ...	VMA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
18409	162	TTG ...	LVL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
12689	81	TTG ...	LNL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
38411	195	TTG ...	LNS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
41075	126	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1450544	78	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
7665	174	ATG ...	MDK ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
20250	36	CTG ...	LKT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
9330	201	ATG ...	MKL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell

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