Transcript 17467 | MetamORF

Transcript

ID CARD

MetamORF ID

17467

ENSMUST00000149489

Name

Psmd3-204

Strand

Biotype

retained_intron

Start-end positions

98682565-98692517

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:22123

Aliases

AI255837,
AntP91a, D11Bwg1349e, ENSMUSG00000017221,
MGI:98858, NCBI:22123, OFF:Psmd3,
Psd3, Psmd3, Tstap91a

Chr 11

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
21809	84	CTG ...	LVS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
20106	105	CTG ...	LYK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
302432	60	ATG ...	MPG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
19690	87	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
651436	45	CTG ...	LRP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, E14, Liver, MEF
1288230	39	AAG ...	KNR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
91750	159	CTG ...	LRA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
650545	60	CTG ...	LCM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver
1289750	75	AAG ...	KSV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
774157	93	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
643809	129	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
647793	54	ATG ...	MAS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Liver
646415	45	CTG ...	LRW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
21269	141	CTG ...	LQF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Testis
1287136	42	AGG ...	RLH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1285040	30	ACG ...	TML ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
91038	141	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
19702	207	GTG ...	VRQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, Testis
1284554	195	ATT ...	ITC ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
91318	54	CTG ...	LVS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, Testis
17466	201	TTG ...	LHA ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
299581	63	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1287616	249	AAG ...	KPP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
652335	75	ATG ...	MFC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver, MEF
20916	198	GTG ...	VEM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
447687	84	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
18729	33	CTG ...	LFP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver, MEF, Testis
649278	168	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
91144	132	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
773260	87	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
18567	75	CTG ...	LQL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
1291062	42	AGG ...	RLS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
22003	165	CTG ...	LMQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
18329	42	GTG ...	VRV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, Testis
1286541	141	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
22033	96	CTG ...	LPE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, Testis
18880	105	TTG ...	LYD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
18457	150	CTG ...	LRM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
1286229	123	ACG ...	TPG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
311533	54	ATG ...	MPF ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver
22043	141	TTG ...	LNL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, Testis
90946	30	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Testis
1291223	102	AAG ...	KPT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
18640	162	GTG ...	VLR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
1289938	93	AGG ...	RQQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
18126	129	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
1289794	54	ACG ...	TRA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
17592	174	CTG ...	LRH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, Testis
1289449	33	AGG ...	RYL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
773808	192	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
643725	138	TTG ...	LFA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
447991	36	GTG ...	VQA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
20448	69	GTG ...	VFP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
18905	120	CTG ...	LEY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Testis
91607	117	CTG ...	LHY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
1288476	96	ACG ...	TMT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
647641	141	CTG ...	LLF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver
18181	69	CTG ...	LLM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Testis
91003	93	GTG ...	VHG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
20337	102	GTG ...	VRP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Testis
1285029	126	ATC ...	IQL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
20270	51	CTG ...	LMN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Testis
91861	60	CTG ...	LCL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, Testis

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